Browse Element(s) Details


Os.7279.3.S1_at

Description gb:NM_195334.1
DB_XREF= gi:37532027
TID=Os.7279.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7279 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative transposon protein (OSJNBa0034E15.2), mRNA.
PROD=putative transposon protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g228108/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g118708/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g22760OsAffx.12861.4.S1_at9/1112+12840719..12843923hypothetical protein
LOC_Os12g22760OsAffx.12861.4.S1_x_at9/1112+12840719..12843923hypothetical protein
LOC_Os12g22770OsAffx.7664.1.S1_s_at11/1112+12845213..12847529hypothetical protein
LOC_Os12g22770OsAffx.7664.1.S1_x_at8/1112+12845213..12847529hypothetical protein
LOC_Os12g22770OsAffx.7664.1.S1_at6/1112+12845213..12847529hypothetical protein
LOC_Os12g22770OsAffx.10967.1.S1_x_at4/1112+12845213..12847529hypothetical protein
LOC_Os12g22770Os.8753.2.S1_at2/1112+12845213..12847529hypothetical protein
LOC_Os12g22770Os.8753.4.S1_x_at1/1112+12845213..12847529hypothetical protein
LOC_Os12g22780OsAffx.31835.1.S1_at11/1112+12850448..12851431hypothetical protein
LOC_Os12g22790NANA12+12860537..12860836hypothetical protein
LOC_Os12g22800Os.54004.1.S1_at11/1112+12861763..12863518expressed protein
LOC_Os12g22810Os.7279.1.S1_at11/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22810Os.7279.2.S1_at11/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22810Os.7279.2.S1_x_at11/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22810Os.7279.3.S1_at8/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22820NANA12+12882112..12883317retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g22830NANA12+12883810..12886366retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g22850NANA12+12896882..12897298hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7279.3.S1_at--596--2472Chr12:12873075..12873099 (25 bp)
AACACAGCCACAGGAAGCCATGAAG
LOC_Os12g22810
Os.7279.3.S1_at--372--1692Chr12:12873090..12873114 (25 bp)
AGCCATGAAGCCACCATTGCTGAAG
LOC_Os12g22810
Os.7279.3.S1_at--33--6292Chr12:12873234..12873258 (25 bp)
GATGTTATCTTATATGCTGTCTTGA
LOC_Os12g22810
Os.7279.3.S1_at--638--2532Chr12:12873413..12873437 (25 bp)
AACTATGGCTGATGCTCAGTACACA
LOC_Os12g22810
Os.7279.3.S1_at--1033--8332Chr12:12873419..12873443 (25 bp)
GGCTGATGCTCAGTACACATCCATT
LOC_Os12g22810
Os.7279.3.S1_at--489--4832Chr12:12873426..12873450 (25 bp)
GCTCAGTACACATCCATTGCATGGC
LOC_Os12g22810
Os.7279.3.S1_at--568--7032Chr12:12873431..12873455 (25 bp)
GTACACATCCATTGCATGGCCAAAC
LOC_Os12g22810
Os.7279.3.S1_at--521--10732Chr12:12873442..12873576 (25 bp)
TTGCATGGCCAAACAATAGGTTGAA
LOC_Os12g22810
Os.7279.3.S1_at--166--811NONE
ATGGGATATCCCAAGGCAACCGCCT
NONE
Os.7279.3.S1_at--722--2931Chr10:6347430..6347454 (25 bp)
AAGGCAACCGCCTATGCGCATCGTG
NONE
Os.7279.3.S1_at--279--4171Chr10:6347422..6347446 (25 bp)
CGCCTATGCGCATCGTGTTATTATG
NONE
Target Sequence 
AACACAGCCACAGGAAGCCATGAAGCCACCATTGCTGAAGGAGAAAATCTTGTTGGTAAAGATGTTATCTTATATGCTGT
CTTGAGATCTGACACCCCTGTGGCTAAAGCAACAATTGTATCAATTGATCCAAGTTCCTTGGTGGGAGGTCAACCTCTAG
GTGTTGAATTCTATGAAGTTGTTGTCAATGTCGTGCTTAAAAGAGATGCATTGCTTCCTCGTCCATATGATGATATGCAA
ACTATGGCTGATGCTCAGTACACATCCATTGCATGGCCAAACAATAGGTTGAATGTTAGCAAGAGGTCTGCTATGTCCAA
AAGTGCTAACTCCAAAAGTGCAGTAAACACTGCTTGTCCCTTGATCGTTTCAACAACTGATGTTAGAAGCATGGGATATC
CCAAGGCAACCGCCTATGCGCATCGTGTTATTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7279.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis