Browse Element(s) Details


Os.8753.2.S1_at

Description gb:AK067455.1
DB_XREF= gi:32977473
TID=Os.8753.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8753 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0042E19.40), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013105I07, full insert sequence.
FL= gb:AK067455.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g227702/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g22740Os.46012.2.S1_x_at4/1112+12824131..12828678retrotransposon protein, putative, unclassified
LOC_Os12g22740Os.27088.1.A1_x_at3/1112+12824131..12828678retrotransposon protein, putative, unclassified
LOC_Os12g22740Os.46012.3.S1_x_at1/1112+12824131..12828678retrotransposon protein, putative, unclassified
LOC_Os12g22740Os.54691.1.S1_x_at1/1112+12824131..12828678retrotransposon protein, putative, unclassified
LOC_Os12g22750NANA12+12838213..12838922hypothetical protein
LOC_Os12g22760OsAffx.12861.4.S1_at9/1112+12840719..12843923hypothetical protein
LOC_Os12g22760OsAffx.12861.4.S1_x_at9/1112+12840719..12843923hypothetical protein
LOC_Os12g22770OsAffx.7664.1.S1_s_at11/1112+12845213..12847529hypothetical protein
LOC_Os12g22770OsAffx.7664.1.S1_x_at8/1112+12845213..12847529hypothetical protein
LOC_Os12g22770OsAffx.7664.1.S1_at6/1112+12845213..12847529hypothetical protein
LOC_Os12g22770OsAffx.10967.1.S1_x_at4/1112+12845213..12847529hypothetical protein
LOC_Os12g22770Os.8753.2.S1_at2/1112+12845213..12847529hypothetical protein
LOC_Os12g22770Os.8753.4.S1_x_at1/1112+12845213..12847529hypothetical protein
LOC_Os12g22780OsAffx.31835.1.S1_at11/1112+12850448..12851431hypothetical protein
LOC_Os12g22790NANA12+12860537..12860836hypothetical protein
LOC_Os12g22800Os.54004.1.S1_at11/1112+12861763..12863518expressed protein
LOC_Os12g22810Os.7279.1.S1_at11/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22810Os.7279.2.S1_at11/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22810Os.7279.2.S1_x_at11/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22810Os.7279.3.S1_at8/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8753.2.S1_at--388--1631Chr12:12845732..12845756 (25 bp)
AGCGGCGGCGCAATGAACACACAGA
LOC_Os12g22770
Os.8753.2.S1_at--413--3011Chr12:12845743..12845767 (25 bp)
AATGAACACACAGACGCGACGGCAG
LOC_Os12g22770
Os.8753.2.S1_at--602--8151Chr12:12848696..12848720 (25 bp)
GGAAATGTACCGCACTCATATTTTT
NONE
Os.8753.2.S1_at--672--1451Chr12:12848764..12848788 (25 bp)
AGAAGATTCAGAACTATCCCGACTT
NONE
Os.8753.2.S1_at--486--2031Chr12:12848776..12848800 (25 bp)
ACTATCCCGACTTCGCAAAATTCGT
NONE
Os.8753.2.S1_at--1097--7111Chr12:12848859..12848883 (25 bp)
GTCATGGATCAGCATCTTTAAGCAG
NONE
Os.8753.2.S1_at--885--7591Chr12:12848887..12848911 (25 bp)
GGGCAGCTGACTTCAGACATCGTAG
NONE
Os.8753.2.S1_at--662--10532Chr12:12848914..12848938 (25 bp)
TTCAGTTCTGCTTTGGTAGCTGTTC
NONE
Os.8753.2.S1_at--128--6974Chr12:12848929..12848953 (25 bp)
GTAGCTGTTCACGTTTTATGTTATG
NONE
Os.8753.2.S1_at--708--8811Chr12:12848963..12848987 (25 bp)
TGATTGTAACACTAGCGTTCCCAGC
NONE
Os.8753.2.S1_at--466--10651Chr12:12848980..12849004 (25 bp)
TTCCCAGCTTCGTTTCATTTTTCTT
NONE
Target Sequence 
AGCGGCGGCGCAATGAACACACAGACGCGACGGCAGGGGTGGCGTGCGGCGCGACCTGGAGGCGACGGCAACGGCGACGG
CATGGTTCTCTCCTCCGGCCGCCACCTTCTCTCCGATTGCACGTGCACCAATTAGAGTTGGAGAAGACCAACCTCCTCCT
TCCTGGGACCCTGTACCCTCTCCAAGAGGAAATGTACCGCACTCATATTTTTTTGACTTCCACCGAAGAAATGTTGCAAG
AATCCTAAATTGATCAGAAGATTCAGAACTATCCCGACTTCGCAAAATTCGTCGACGGAATGGTAAACAAGGGACAGATT
TTTGTTATAGATGATTCTGGACAAGATGGTGTCATGGATCAGCATCTTTAAGCAGGAGGGGCAGCTGACTTCAGACATCG
TAGAATTCAGTTCTGCTTTGGTAGCTGTTCACGTTTTATGTTATGACTACACCATGATTGTAACACTAGCGTTCCCAGCT
TCGTTTCATTTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8753.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis