Browse Element(s) Details


OsAffx.2848.1.S1_at

Description tigr:9630.m03208
TID=OsAffx.2848.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3376011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33720OsAffx.24559.1.S1_x_at11/112+20112353..20112961Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g33730OsAffx.24560.1.S1_s_at10/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.28660.1.S1_at3/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.12861.4.S1_at2/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.28660.1.S1_x_at1/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.12861.4.S1_x_at1/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33740Os.31602.1.S1_at11/112+20125938..20127025expressed protein
LOC_Os02g33740OsAffx.2847.1.S1_at11/112+20125938..20127025expressed protein
LOC_Os02g33750Os.50564.1.A1_s_at11/112+20129645..20134860transposon protein, putative, unclassified, expressed
LOC_Os02g33750Os.50564.2.S1_at10/112+20129645..20134860transposon protein, putative, unclassified, expressed
LOC_Os02g33760OsAffx.2848.1.S1_at11/112+20136469..20138777hypothetical protein
LOC_Os02g33770Os.8837.1.S1_at11/112+20142014..20144139expressed protein
LOC_Os02g33780Os.56326.2.S1_at11/112+20146585..20148253expressed protein
LOC_Os02g33790OsAffx.24561.1.S1_at11/112+20151874..20152900hypothetical protein
LOC_Os02g33800OsAffx.24562.1.S1_at11/112+20155442..20155786hypothetical protein
LOC_Os02g33810OsAffx.2849.1.S1_at11/112+20158053..20158741hypothetical protein
LOC_Os02g33820Os.12094.1.S1_a_at11/112+20159778..20160781ABA/WDS induced protein, expressed
LOC_Os02g33830OsAffx.24563.1.S1_at11/112+20163722..20166287expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2848.1.S1_at--505--1991Chr02:20137230..20137254 (25 bp)
ACTGCCACCGTTATCATAGTCGCTG
LOC_Os02g33760
OsAffx.2848.1.S1_at--402--1791Chr02:20137236..20137260 (25 bp)
ACCGTTATCATAGTCGCTGTCATCG
LOC_Os02g33760
OsAffx.2848.1.S1_at--255--3651Chr02:20137268..20137292 (25 bp)
CTTCGTCCCTGAACTAGGCAGATTT
LOC_Os02g33760
OsAffx.2848.1.S1_at--1055--5471Chr02:20137278..20137302 (25 bp)
GAACTAGGCAGATTTGCTGCTCCTG
LOC_Os02g33760
OsAffx.2848.1.S1_at--90--931Chr02:20137283..20137307 (25 bp)
AGGCAGATTTGCTGCTCCTGTGGGC
LOC_Os02g33760
OsAffx.2848.1.S1_at--713--7491Chr02:20137312..20137336 (25 bp)
GTGGTGGATCCACCCAGTCCGAAGC
LOC_Os02g33760
OsAffx.2848.1.S1_at--748--531Chr02:20137341..20137365 (25 bp)
ATCGCCGCTCCCAAGGACAAGGGCT
LOC_Os02g33760
OsAffx.2848.1.S1_at--365--4791Chr02:20137347..20137368 (22 bp)
GCTCCCAAGGACAAGGGCTGTGACG
LOC_Os02g33760
OsAffx.2848.1.S1_at--769--4611Chr02:20137766..20137790 (25 bp)
GCGAGCAGTTGTGGTCCACCTGGAA
LOC_Os02g33760
OsAffx.2848.1.S1_at--1005--8571Chr02:20137777..20137801 (25 bp)
TGGTCCACCTGGAACCTAAAGAGTT
LOC_Os02g33760
OsAffx.2848.1.S1_at--1140--8171Chr02:20137787..20137811 (25 bp)
GGAACCTAAAGAGTTCTCATTCAGA
LOC_Os02g33760
Target Sequence 
ACTGCCACCGTTATCATAGTCGCTGTCATCGCCGCTCCCTTCGTCCCTGAACTAGGCAGATTTGCTGCTCCTGTGGGCGC
CGGTGGTGGATCCACCCAGTCCGAAGCCGCCATCGCCGCTCCCAAGGACAAGGGCTGTGACGGGAAGTGGAGGAAGGAGG
AAGAGGGGAAAGTGGAGGTGGAGGAGGAGGAGGAGGAGGAGAAGGGAAGTGAAATGGAAAGAAAGTTACTGAGAATGAAG
GAAAGAGAAGGGCAGAGGAGGAAAAGAGGAGGTGGACAGGCTAAGGGGGTGCGAGCAGTTGTGGTCCACCTGGAACCTAA
AGAGTTCTCATTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2848.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis