Browse Element(s) Details


OsAffx.24563.1.S1_at

Description tigr:9630.m03215
TID=OsAffx.24563.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AC007203 Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3383011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33760OsAffx.2848.1.S1_at11/112+20136469..20138777hypothetical protein
LOC_Os02g33770Os.8837.1.S1_at11/112+20142014..20144139expressed protein
LOC_Os02g33780Os.56326.2.S1_at11/112+20146585..20148253expressed protein
LOC_Os02g33790OsAffx.24561.1.S1_at11/112+20151874..20152900hypothetical protein
LOC_Os02g33800OsAffx.24562.1.S1_at11/112+20155442..20155786hypothetical protein
LOC_Os02g33810OsAffx.2849.1.S1_at11/112+20158053..20158741hypothetical protein
LOC_Os02g33820Os.12094.1.S1_a_at11/112+20159778..20160781ABA/WDS induced protein, expressed
LOC_Os02g33830OsAffx.24563.1.S1_at11/112+20163722..20166287expressed protein
LOC_Os02g33840Os.53945.1.S1_at11/112+20168947..20170732F-box domain containing protein, expressed
LOC_Os02g33850OsAffx.2850.1.S1_at11/112+20173145..20176162Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os02g33850OsAffx.26611.1.S1_x_at1/112+20173145..20176162Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os02g33860Os.8210.1.S1_at11/112+20176345..20180268Will die slowly protein, putative, expressed
LOC_Os02g33870Os.53142.1.S1_at3/112+20180414..20183719retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33880NANA2+20185584..20188203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33890OsAffx.2851.1.S1_at11/112+20189808..20192315hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24563.1.S1_at--839--6071Chr02:20164770..20164794 (25 bp)
GAGTACCCTCGTGAGTATAGACCTA
LOC_Os02g33830
OsAffx.24563.1.S1_at--743--6791Chr02:20164066..20164090 (25 bp)
GTTATATGGTTTCTTGTCCTCCACA
LOC_Os02g33830
OsAffx.24563.1.S1_at--728--1911Chr02:20164025..20164049 (25 bp)
ACGGGAGCGCCATCATTACAGTGTT
LOC_Os02g33830
OsAffx.24563.1.S1_at--937--9051Chr02:20163997..20164021 (25 bp)
TGCATCGTGGCAATCTACGTCGGAA
LOC_Os02g33830
OsAffx.24563.1.S1_at--155--3731Chr02:20163983..20164007 (25 bp)
CTACGTCGGAATCCTCTTGTGGAGG
LOC_Os02g33830
OsAffx.24563.1.S1_at--848--1951Chr02:20163955..20163979 (25 bp)
ACTGGTTTCATTTGGTCTGCGATAG
LOC_Os02g33830
OsAffx.24563.1.S1_at--227--10031Chr02:20163933..20163957 (25 bp)
TAGACAACAGTCATGCCAGAAGGCT
LOC_Os02g33830
OsAffx.24563.1.S1_at--574--5451Chr02:20163830..20163854 (25 bp)
GAACGAAGTTGAGCTGGCTGGCCAA
LOC_Os02g33830
OsAffx.24563.1.S1_at--204--951Chr02:20163802..20163826 (25 bp)
AGGAAGGGCTTCTCGCAGCGTGTCA
LOC_Os02g33830
OsAffx.24563.1.S1_at--789--10811Chr02:20163775..20163799 (25 bp)
TTGTCTTTCTCCTCTGCTATGATAG
LOC_Os02g33830
OsAffx.24563.1.S1_at--629--9071Chr02:20163761..20163785 (25 bp)
TGCTATGATAGTTTTCACCCTCTCA
LOC_Os02g33830
Target Sequence 
GAGTACCCTCGTGAGTATAGACCTAAGTGGGGACATATGAGCTTCTTAGTAGACATTTTGAGGCCAACTGTTGAAGAGGG
GTCCTCATGGTATCATTTTCTGAAGAAGGCAAGTGGTGGCTGCAGTGATCTTATGTATAGTGGCCACATGCTTGTTGCTG
TCCTCACCGCTATGGCATGGACGGAAGCATATGGGGGATGGATCTCTGTTGTTATATGGTTTCTTGTCCTCCACAGCGCT
CAGAGGGAGATACGGGAGCGCCATCATTACAGTGTTGATTGCATCGTGGCAATCTACGTCGGAATCCTCTTGTGGAGGAT
GACTGGTTTCATTTGGTCTGCGATAGACAACAGTCATGCCAGAAGGCTTGCAAAGCTCGACAAGGTTCAGAACAGACTAT
TTCAGGCTGCAAAAGATTCAGACATGGATGAAATAAGGGGTCTGCTGAACGAAGTTGAGCTGGCTGGCCAAGAGAGGAAG
GGCTTCTCGCAGCGTGTCATCTTGTCTTTCTCCTCTGCTATGATAGTTTTCACCCTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis