Browse Element(s) Details


Os.53945.1.S1_at

Description gb:AK100963.1
DB_XREF= gi:32986172
TID=Os.53945.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53945 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023142A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023142A10, full insert sequence.
FL= gb:AK100963.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3384011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33770Os.8837.1.S1_at11/112+20142014..20144139expressed protein
LOC_Os02g33780Os.56326.2.S1_at11/112+20146585..20148253expressed protein
LOC_Os02g33790OsAffx.24561.1.S1_at11/112+20151874..20152900hypothetical protein
LOC_Os02g33800OsAffx.24562.1.S1_at11/112+20155442..20155786hypothetical protein
LOC_Os02g33810OsAffx.2849.1.S1_at11/112+20158053..20158741hypothetical protein
LOC_Os02g33820Os.12094.1.S1_a_at11/112+20159778..20160781ABA/WDS induced protein, expressed
LOC_Os02g33830OsAffx.24563.1.S1_at11/112+20163722..20166287expressed protein
LOC_Os02g33840Os.53945.1.S1_at11/112+20168947..20170732F-box domain containing protein, expressed
LOC_Os02g33850OsAffx.2850.1.S1_at11/112+20173145..20176162Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os02g33850OsAffx.26611.1.S1_x_at1/112+20173145..20176162Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os02g33860Os.8210.1.S1_at11/112+20176345..20180268Will die slowly protein, putative, expressed
LOC_Os02g33870Os.53142.1.S1_at3/112+20180414..20183719retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33880NANA2+20185584..20188203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33890OsAffx.2851.1.S1_at11/112+20189808..20192315hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53945.1.S1_at--264--8171Chr02:20170157..20170181 (25 bp)
GGAACACCATTACCAGATCTCGCTG
LOC_Os02g33840
Os.53945.1.S1_at--686--451Chr02:20170189..20170213 (25 bp)
ATCTGCTCAACGTTTTCGGTGGCTA
LOC_Os02g33840
Os.53945.1.S1_at--30--5311Chr02:20170221..20170245 (25 bp)
GAAGGCTTCGTATCCGCAGCAGTGT
LOC_Os02g33840
Os.53945.1.S1_at--875--6291Chr02:20170289..20170313 (25 bp)
GATGATGCTCCAGTGCGACACCGAG
LOC_Os02g33840
Os.53945.1.S1_at--796--8171Chr02:20170315..20170339 (25 bp)
GGAACGTGCTCATGTTTTACTCCCT
LOC_Os02g33840
Os.53945.1.S1_at--944--9671Chr02:20170351..20170375 (25 bp)
TCACCGTCCTGTCCAGATATATGCT
LOC_Os02g33840
Os.53945.1.S1_at--633--951Chr02:20170378..20170402 (25 bp)
AGGAAAGCCTTCTTGCGCATGCGTT
LOC_Os02g33840
Os.53945.1.S1_at--595--5351Chr02:20170419..20170443 (25 bp)
GAAGATGCAATCGACGGCGACCCGC
LOC_Os02g33840
Os.53945.1.S1_at--1004--10671Chr02:20170449..20170473 (25 bp)
TTCCAAGGTCCGTAATCTGCTAGAT
LOC_Os02g33840
Os.53945.1.S1_at--642--1311Chr02:20170511..20170535 (25 bp)
AGATGTGTGTTCAAGTTTCCGTAGA
LOC_Os02g33840
Os.53945.1.S1_at--999--6331Chr02:20170661..20170685 (25 bp)
GATGCTCTCTGTTAATTTCTGAATT
LOC_Os02g33840
Target Sequence 
GGAACACCATTACCAGATCTCGCTGCCGGTGGATCTGCTCAACGTTTTCGGTGGCTACGACGACGAAGGCTTCGTATCCG
CAGCAGTGTTCGCCGTGTCCCAGGAGAGGAATGTGCTGGCACAGTGCCCGGCGATGATGCTCCAGTGCGACACCGAGGGG
AACGTGCTCATGTTTTACTCCCTCGCCGGCCACCTCACCGTCCTGTCCAGATATATGCTCCAGGAAAGCCTTCTTGCGCA
TGCGTTCCTTCCGATGCGGCAGGAAGATGCAATCGACGGCGACCCGCCGTTCTTCCAAGGTCCGTAATCTGCTAGATAGC
AACCAGGTTTTGCAATCTGCTGAATCTATGCTTTAGATGTGTGTTCAAGTTTCCGTAGATGTAGAAGAAGCTTGAAATTG
CCTGTGGCAATCAATTCGACAGAATTGGTTTGTTGCTGTTGCTAAGTCATTTGGACATTTTGTATTTAGTAGCAAGCATG
CTGGTTGGGATTCATGTTGATACAGATGCTCTCTGTTAATTTCTGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53945.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis