Browse Element(s) Details


Os.8210.1.S1_at

Description gb:AK105242.1
DB_XREF= gi:32990451
TID=Os.8210.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8210 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-D11, full insert sequence.
FL= gb:AK105242.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3386011/11Will die slowly protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33790OsAffx.24561.1.S1_at11/112+20151874..20152900hypothetical protein
LOC_Os02g33800OsAffx.24562.1.S1_at11/112+20155442..20155786hypothetical protein
LOC_Os02g33810OsAffx.2849.1.S1_at11/112+20158053..20158741hypothetical protein
LOC_Os02g33820Os.12094.1.S1_a_at11/112+20159778..20160781ABA/WDS induced protein, expressed
LOC_Os02g33830OsAffx.24563.1.S1_at11/112+20163722..20166287expressed protein
LOC_Os02g33840Os.53945.1.S1_at11/112+20168947..20170732F-box domain containing protein, expressed
LOC_Os02g33850OsAffx.2850.1.S1_at11/112+20173145..20176162Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os02g33850OsAffx.26611.1.S1_x_at1/112+20173145..20176162Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os02g33860Os.8210.1.S1_at11/112+20176345..20180268Will die slowly protein, putative, expressed
LOC_Os02g33870Os.53142.1.S1_at3/112+20180414..20183719retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33880NANA2+20185584..20188203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33890OsAffx.2851.1.S1_at11/112+20189808..20192315hypothetical protein
LOC_Os02g33900OsAffx.25517.1.S1_at2/112+20197065..20199076transposon protein, putative, unclassified
LOC_Os02g33910NANA2+20201961..20207370retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009749biological_processresponse to glucose stimulus
GO:0016481biological_processnegative regulation of transcription
GO:0005634cellular_componentnucleus
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
GO:0017163molecular_functionnegative regulator of basal transcription activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8210.1.S1_at--801--10631Chr02:20179542..20179563 (22 bp)
TTCGAGCTCATAGTTCTGTGGTCAC
LOC_Os02g33860
Os.8210.1.S1_at--43--9991Chr02:20179695..20179719 (25 bp)
TAGCGTCAGTTATCACCCAACAAGG
LOC_Os02g33860
Os.8210.1.S1_at--803--2871Chr02:20179716..20179740 (25 bp)
AAGGGCTTGCATGCTAACTTCATCT
LOC_Os02g33860
Os.8210.1.S1_at--902--8471Chr02:20179746..20179770 (25 bp)
TGGCACCATTCGTGTTTGGACCTAA
LOC_Os02g33860
Os.8210.1.S1_at--376--5211Chr02:20179777..20179801 (25 bp)
GAATTGCTGTTGTGCTGGACTCATA
LOC_Os02g33860
Os.8210.1.S1_at--733--7531Chr02:20179821..20179845 (25 bp)
GTGGCATTATTCTCCAATTCATCTA
LOC_Os02g33860
Os.8210.1.S1_at--943--251Chr02:20179994..20180018 (25 bp)
ATATCCACCAAGCTAAGTCTTCTGC
LOC_Os02g33860
Os.8210.1.S1_at--226--4591Chr02:20180017..20180041 (25 bp)
GCGCAGCAAGCTCCGACATGTGAAA
LOC_Os02g33860
Os.8210.1.S1_at--718--331Chr02:20180041..20180065 (25 bp)
ATACAGTCTGCCGATGTACCATGGC
LOC_Os02g33860
Os.8210.1.S1_at--386--6971Chr02:20180056..20180080 (25 bp)
GTACCATGGCCATTACAGCTAGTTC
LOC_Os02g33860
Os.8210.1.S1_at--1148--3571Chr02:20180149..20180173 (25 bp)
CATTTGTTACTACGGTCACCTACGG
LOC_Os02g33860
Target Sequence 
TTCGAGCTCATAGTTCTGTGGTCACTAGCGTCAGTTATCACCCAACAAGGGCTTGCATGCTAACTTCATCTGTTGATGGC
ACCATTCGTGTTTGGACCTAAAAGTGGGAATTGCTGTTGTGCTGGACTCATATCCTGACAACATTGCTTATGTGGCATTA
TTCTCCAATTCATCTATTTTTGAAGCAGAGAGGATTGAAAAGGATAGATGTTCGCAAGTTCAACCCTAACTGGAACCAAG
GAGCTGGGTGTTAAGATAAGATTGTGCTACTTGGCAGTAGTTCTGGACACGGTCAAGGCAGCAATTTGCTAGTGAGGATG
AACTATATCCACCAAGCTAAGTCTTCTGCGCAGCAAGCTCCGACATGTGAAATACAGTCTGCCGATGTACCATGGCCATT
ACAGCTAGTTCAATCGTGAGAACTGGACCAGTCGAACTGAGTATCCGTTTGGAACTTTACGATCTGGAACGAGTGTACCC
ATTTGTTACTACGGTCACCTACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis