Browse Element(s) Details


OsAffx.2851.1.S1_at

Description tigr:9630.m03221
TID=OsAffx.2851.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3389011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33830OsAffx.24563.1.S1_at11/112+20163722..20166287expressed protein
LOC_Os02g33840Os.53945.1.S1_at11/112+20168947..20170732F-box domain containing protein, expressed
LOC_Os02g33850OsAffx.2850.1.S1_at11/112+20173145..20176162Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os02g33850OsAffx.26611.1.S1_x_at1/112+20173145..20176162Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os02g33860Os.8210.1.S1_at11/112+20176345..20180268Will die slowly protein, putative, expressed
LOC_Os02g33870Os.53142.1.S1_at3/112+20180414..20183719retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33880NANA2+20185584..20188203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33890OsAffx.2851.1.S1_at11/112+20189808..20192315hypothetical protein
LOC_Os02g33900OsAffx.25517.1.S1_at2/112+20197065..20199076transposon protein, putative, unclassified
LOC_Os02g33910NANA2+20201961..20207370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33920Os.43567.1.S1_x_at4/112+20209994..20211884transposon protein, putative, unclassified
LOC_Os02g33920Os.38172.1.S1_x_at4/112+20209994..20211884transposon protein, putative, unclassified
LOC_Os02g33920Os.53217.1.S1_x_at4/112+20209994..20211884transposon protein, putative, unclassified
LOC_Os02g33930OsAffx.2852.1.S1_at11/112+20215156..20218546hypothetical protein
LOC_Os02g33930Os.55788.1.S1_at4/112+20215156..20218546hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2851.1.S1_at--148--8591Chr02:20190235..20190259 (25 bp)
TGGTATCCTACGAGCCCGGGCTGCT
LOC_Os02g33890
OsAffx.2851.1.S1_at--1038--9051Chr02:20190214..20190238 (25 bp)
TGCTTCCCGACGACCCGGAGTGGAC
LOC_Os02g33890
OsAffx.2851.1.S1_at--202--1911Chr02:20190191..20190215 (25 bp)
ACGGAGAAGGCGTACAACGACGTGA
LOC_Os02g33890
OsAffx.2851.1.S1_at--1125--2571Chr02:20190176..20190200 (25 bp)
AACGACGTGAAGTCGGGCCTCGGCA
LOC_Os02g33890
OsAffx.2851.1.S1_at--506--8971Chr02:20190169..20190193 (25 bp)
TGAAGTCGGGCCTCGGCAGCTTCTT
LOC_Os02g33890
OsAffx.2851.1.S1_at--546--9451Chr02:20190157..20190181 (25 bp)
TCGGCAGCTTCTTCCGTAGCTGCAG
LOC_Os02g33890
OsAffx.2851.1.S1_at--1148--1871Chr02:20189981..20190005 (25 bp)
ACGATGCTTCTCGAGTTCTGGGCGG
LOC_Os02g33890
OsAffx.2851.1.S1_at--603--10591Chr02:20189974..20189998 (25 bp)
TTCTCGAGTTCTGGGCGGCGTTGCT
LOC_Os02g33890
OsAffx.2851.1.S1_at--140--10551Chr02:20189879..20189903 (25 bp)
TTCATCACCCACATCTGGGCAATGA
LOC_Os02g33890
OsAffx.2851.1.S1_at--906--2091Chr02:20189869..20189893 (25 bp)
ACATCTGGGCAATGATCACGCACGC
LOC_Os02g33890
OsAffx.2851.1.S1_at--971--7291Chr02:20189840..20189864 (25 bp)
GTGCGTGTGCACAGGCACCACGACT
LOC_Os02g33890
Target Sequence 
TGGTATCCTACGAGCCCGGGCTGCTTCCCGACGACCCGGAGTGGACGGAGAAGGCGTACAACGACGTGAAGTCGGGCCTC
GGCAGCTTCTTCCGTAGCTGCAGCTGCGCCACCGCGGGCCGGCGGGAGAAGCTGGTGCGGTTCGGCGACGACTGGGAGGC
GGAGGCGCCGTCCGCCATGGCCAGGGGGGTCAAGCTCGGGAAGCTGCTCGAGGACCGCGCCTCCGAGTCGACCGAGGGCT
TCGAGGAGGTGTGGACGATGCTTCTCGAGTTCTGGGCGGCGTTGCTCGTCGTCGTCGCGCAGAGGCCGTCGGCGGGTCCG
GAGGGGCACGCGCTGGCGCTGGCCAACGGCGGCGAGTTCATCACCCACATCTGGGCAATGATCACGCACGCCGGCGTGCG
TGTGCACAGGCACCACGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2851.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis