Browse Element(s) Details


Os.55788.1.S1_at

Description gb:AK108800.1
DB_XREF= gi:32994009
TID=Os.55788.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55788 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-C08, full insert sequence.
FL= gb:AK108800.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g339304/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33890OsAffx.2851.1.S1_at11/112+20189808..20192315hypothetical protein
LOC_Os02g33900OsAffx.25517.1.S1_at2/112+20197065..20199076transposon protein, putative, unclassified
LOC_Os02g33910NANA2+20201961..20207370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33920Os.43567.1.S1_x_at4/112+20209994..20211884transposon protein, putative, unclassified
LOC_Os02g33920Os.38172.1.S1_x_at4/112+20209994..20211884transposon protein, putative, unclassified
LOC_Os02g33920Os.53217.1.S1_x_at4/112+20209994..20211884transposon protein, putative, unclassified
LOC_Os02g33930OsAffx.2852.1.S1_at11/112+20215156..20218546hypothetical protein
LOC_Os02g33930Os.55788.1.S1_at4/112+20215156..20218546hypothetical protein
LOC_Os02g33944OsAffx.2853.1.S1_at11/112+20221158..20229248transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g33944Os.54396.1.S1_at11/112+20221158..20229248transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g33960NANA2+20234187..20235137retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g33970NANA2+20235705..20237471retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55788.1.S1_at--207--4151NONE
CGCCCTTCACCAGTGGAGGTGGTGT
NONE
Os.55788.1.S1_at--43--6191Chr02:20215330..20215354 (25 bp)
GAGGAGCTTGTAAGACCATTGGATC
LOC_Os02g33930
Os.55788.1.S1_at--1064--1371Chr02:20215318..20215342 (25 bp)
AGACCATTGGATCATTGCAAGACAA
LOC_Os02g33930
Os.55788.1.S1_at--458--9771Chr02:20215292..20215316 (25 bp)
TAATGATGCCCATGCCAAAGGAGTG
LOC_Os02g33930
Os.55788.1.S1_at--23--9151Chr02:20215266..20215286 (21 bp)
TGCGTGGCCTTCAATATGTGTTTGG
LOC_Os02g33930
Os.55788.1.S1_at--585--2971Chr02:20215140..20215164 (25 bp)
AATGGTTGATTTCGCTTCCATCTCA
NONE
Os.55788.1.S1_at--1002--4911Chr02:20215127..20215151 (25 bp)
GCTTCCATCTCACCCTATGGATTGA
NONE
Os.55788.1.S1_at--561--3351Chr02:20215117..20215141 (25 bp)
CACCCTATGGATTGATAAACCGGCA
NONE
Os.55788.1.S1_at--180--3251Chr02:20215102..20215126 (25 bp)
TAAACCGGCAAAGACTTTCAAGAAG
NONE
Os.55788.1.S1_at--581--5731Chr02:20215027..20215051 (25 bp)
GACTGTTATTCTGAAGACTTGCTTT
NONE
Os.55788.1.S1_at--603--5371Chr02:20215015..20215039 (25 bp)
GAAGACTTGCTTTTCTCAAATGGAT
NONE
Target Sequence 
CGCCCTTCACCAGTGGAGGTGGTGTTGAGATAGGCAACCATTTTTGGAAAGTACGAATCAACCATCCTATTCGTAAAAAT
GAGGAGCTTGTAAGACCATTGGATCATTGCAAGACAATTAATGATGCCCATGCCAAAGGAGTGGTGATTGCGTGGCCTTC
AATATGTGTTTGGAAGATTAATGGTTGATTTCGCTTCCATCTCACCCTATGGATTGATAAACCGGCAAAGACTTTCAAGA
AGAAGAAGAAGAAGACGAATAGATTATCATTTTGTTATATTTTAGTATGAAAGACTGTTATTCTGAAGACTTGCTTTTCT
CAAATGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55788.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis