Browse Element(s) Details


OsAffx.2853.1.S1_at

Description tigr:9630.m03226
TID=OsAffx.2853.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3394411/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33900OsAffx.25517.1.S1_at2/112+20197065..20199076transposon protein, putative, unclassified
LOC_Os02g33910NANA2+20201961..20207370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33920Os.43567.1.S1_x_at4/112+20209994..20211884transposon protein, putative, unclassified
LOC_Os02g33920Os.38172.1.S1_x_at4/112+20209994..20211884transposon protein, putative, unclassified
LOC_Os02g33920Os.53217.1.S1_x_at4/112+20209994..20211884transposon protein, putative, unclassified
LOC_Os02g33930OsAffx.2852.1.S1_at11/112+20215156..20218546hypothetical protein
LOC_Os02g33930Os.55788.1.S1_at4/112+20215156..20218546hypothetical protein
LOC_Os02g33944OsAffx.2853.1.S1_at11/112+20221158..20229248transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g33944Os.54396.1.S1_at11/112+20221158..20229248transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g33960NANA2+20234187..20235137retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g33970NANA2+20235705..20237471retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g33980OsAffx.12338.1.S1_at11/112+20252258..20252653hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2853.1.S1_at--426--1691Chr02:20221737..20221901 (25 bp)
ACCAATCCACCAGGGAATGGGTCGA
LOC_Os02g33944
OsAffx.2853.1.S1_at--339--5291Chr02:20221891..20221915 (25 bp)
GAATGGGTCGATTTAGCCACTATTA
LOC_Os02g33944
OsAffx.2853.1.S1_at--83--9851Chr02:20221925..20221949 (25 bp)
TACTTTCCCCTAGACCAAGTGATGA
LOC_Os02g33944
OsAffx.2853.1.S1_at--981--5971Chr02:20222008..20222032 (25 bp)
GAGAAAATCCGATGCCCATGTGTCA
LOC_Os02g33944
OsAffx.2853.1.S1_at--270--9171Chr02:20222020..20222044 (25 bp)
TGCCCATGTGTCAAATGTGCTCTAA
LOC_Os02g33944
OsAffx.2853.1.S1_at--1160--8391Chr02:20222035..20222059 (25 bp)
TGTGCTCTAAGGTGGTTACGGAAAC
LOC_Os02g33944
OsAffx.2853.1.S1_at--240--7771Chr02:20222128..20222152 (25 bp)
GGTGAAACTGCAGCATTCATCTCTG
LOC_Os02g33944
OsAffx.2853.1.S1_at--849--9471Chr02:20222149..20222173 (25 bp)
TCTGCTAACAGAGAGGCACAGTTGC
LOC_Os02g33944
OsAffx.2853.1.S1_at--777--9031Chr02:20222195..20222219 (25 bp)
TGCACCAGTTAGTCATAGATGCTTT
LOC_Os02g33944
OsAffx.2853.1.S1_at--654--8131Chr02:20222236..20222260 (25 bp)
GGACATCCAATGAATTCATCTACTT
LOC_Os02g33944
OsAffx.2853.1.S1_at--933--9591Chr02:20222251..20222275 (25 bp)
TCATCTACTTGCCAAAATTCCTTTG
LOC_Os02g33944
Target Sequence 
ACCAATCCACCAGGGAATGGGTCGATTTAGCCACTATTAAGAAGTTACTACTTTCCCCTAGACCAAGTGATGACTATTTG
ACTGGTGTAGATGGTTTTCTTGATTTTGCATACAATGGGAAAAGTTCTGGAGAGAAAATCCGATGCCCATGTGTCAAATG
TGCTCTAAGGTGGTTACGGAAACGGAATGAAGTGTATGATCATTTAGTTTGTGATGGAATGCTAAAAGAATATACAATTT
GGGGCTGTCATGGTGAAACTGCAGCATTCATCTCTGCTAACAGAGAGGCACAGTTGCAAGAAAAAACAAAAACTAATATG
CACCAGTTAGTCATAGATGCTTTTGGGCATATGGATAATGGACATCCAATGAATTCATCTACTTGCCAAAATTCCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2853.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis