Browse Element(s) Details


OsAffx.2850.1.S1_at

Description tigr:9630.m03217
TID=OsAffx.2850.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to elongation factor EF-2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3385011/11Elongation factor Tu GTP binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33780Os.56326.2.S1_at11/112+20146585..20148253expressed protein
LOC_Os02g33790OsAffx.24561.1.S1_at11/112+20151874..20152900hypothetical protein
LOC_Os02g33800OsAffx.24562.1.S1_at11/112+20155442..20155786hypothetical protein
LOC_Os02g33810OsAffx.2849.1.S1_at11/112+20158053..20158741hypothetical protein
LOC_Os02g33820Os.12094.1.S1_a_at11/112+20159778..20160781ABA/WDS induced protein, expressed
LOC_Os02g33830OsAffx.24563.1.S1_at11/112+20163722..20166287expressed protein
LOC_Os02g33840Os.53945.1.S1_at11/112+20168947..20170732F-box domain containing protein, expressed
LOC_Os02g33850OsAffx.2850.1.S1_at11/112+20173145..20176162Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os02g33850OsAffx.26611.1.S1_x_at1/112+20173145..20176162Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os02g33860Os.8210.1.S1_at11/112+20176345..20180268Will die slowly protein, putative, expressed
LOC_Os02g33870Os.53142.1.S1_at3/112+20180414..20183719retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33880NANA2+20185584..20188203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33890OsAffx.2851.1.S1_at11/112+20189808..20192315hypothetical protein
LOC_Os02g33900OsAffx.25517.1.S1_at2/112+20197065..20199076transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0003746molecular_functiontranslation elongation factor activity
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2850.1.S1_at--1044--8271Chr02:20173699..20173723 (25 bp)
GGCTTGATATTCCTTGTTAAACCTT
LOC_Os02g33850
OsAffx.2850.1.S1_at--1003--8711Chr02:20173683..20173707 (25 bp)
TTAAACCTTACATACTTCCGGATAG
LOC_Os02g33850
OsAffx.2850.1.S1_at--1160--7811Chr02:20173612..20173636 (25 bp)
GGTCAGATCATTACAGCGGTCCGAG
LOC_Os02g33850
OsAffx.2850.1.S1_at--1068--5071Chr02:20173576..20173600 (25 bp)
GCAGCCATCCTTGAGAGCAAACCAA
LOC_Os02g33850
OsAffx.2850.1.S1_at--769--8091Chr02:20173544..20173568 (25 bp)
GGAGCCAATGTACTTCTGCGAACTG
LOC_Os02g33850
OsAffx.2850.1.S1_at--445--4731Chr02:20173486..20173510 (25 bp)
GCTGTTCTTGGCAATTGTCGGGCGA
LOC_Os02g33850
OsAffx.2850.1.S1_at--205--7611Chr02:20173436..20173460 (25 bp)
GGGAACCTCATTGTTCACGGTGCAT
LOC_Os02g33850
OsAffx.2850.1.S1_at--706--3531Chr02:20173414..20173438 (25 bp)
CATGCGTATTTGTCAGTTGCCGAGA
LOC_Os02g33850
OsAffx.2850.1.S1_at--338--6691Chr02:20173399..20173423 (25 bp)
GTTGCCGAGAGCTCTGAATTCTCTA
LOC_Os02g33850
OsAffx.2850.1.S1_at--674--7091Chr02:20173323..20173347 (25 bp)
GTCACTGGGAGACTGTTCCTCAGGA
LOC_Os02g33850
OsAffx.2850.1.S1_at--184--9631Chr02:20173304..20173328 (25 bp)
TCAGGATCCCTTCTTTGTTCCGAAA
LOC_Os02g33850
Target Sequence 
GGCTTGATATTCCTTGTTAAACCTTACATACTTCCGGATAGTGCAGATGCTAGCAATAATCAATCTGACCATTACAGCAC
CTTCAGTGGTCAGATCATTACAGCGGTCCGAGAAGCATGCCAGGCAGCCATCCTTGAGAGCAAACCAAGGCTTGTGGAGC
CAATGTACTTCTGCGAACTGACCACACCTACTGAGCAGTTAGGTTCCATGTATGCTGTTCTTGGCAATTGTCGGGCGAGG
GTGCTGAAGGAAGAGATGCAGGAGGGAACCTCATTGTTCACGGTGCATGCGTATTTGTCAGTTGCCGAGAGCTCTGAATT
CTCTAAGAAGCTCAGGAATGCAACTGCAGGTGCAGCCAGCGCGCTTCTGGCCTTCAGTCACTGGGAGACTGTTCCTCAGG
ATCCCTTCTTTGTTCCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2850.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis