Browse Element(s) Details


Os.8837.1.S1_at

Description gb:AK065397.1
DB_XREF= gi:32975415
TID=Os.8837.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8837 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013022H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022H04, full insert sequence.
FL= gb:AK065397.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3377011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33730OsAffx.24560.1.S1_s_at10/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.28660.1.S1_at3/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.12861.4.S1_at2/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.28660.1.S1_x_at1/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.12861.4.S1_x_at1/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33740Os.31602.1.S1_at11/112+20125938..20127025expressed protein
LOC_Os02g33740OsAffx.2847.1.S1_at11/112+20125938..20127025expressed protein
LOC_Os02g33750Os.50564.1.A1_s_at11/112+20129645..20134860transposon protein, putative, unclassified, expressed
LOC_Os02g33750Os.50564.2.S1_at10/112+20129645..20134860transposon protein, putative, unclassified, expressed
LOC_Os02g33760OsAffx.2848.1.S1_at11/112+20136469..20138777hypothetical protein
LOC_Os02g33770Os.8837.1.S1_at11/112+20142014..20144139expressed protein
LOC_Os02g33780Os.56326.2.S1_at11/112+20146585..20148253expressed protein
LOC_Os02g33790OsAffx.24561.1.S1_at11/112+20151874..20152900hypothetical protein
LOC_Os02g33800OsAffx.24562.1.S1_at11/112+20155442..20155786hypothetical protein
LOC_Os02g33810OsAffx.2849.1.S1_at11/112+20158053..20158741hypothetical protein
LOC_Os02g33820Os.12094.1.S1_a_at11/112+20159778..20160781ABA/WDS induced protein, expressed
LOC_Os02g33830OsAffx.24563.1.S1_at11/112+20163722..20166287expressed protein
LOC_Os02g33840Os.53945.1.S1_at11/112+20168947..20170732F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8837.1.S1_at--356--8891Chr02:20143567..20143591 (25 bp)
TGAGGGATCTGGTGGTCCAACTGCT
LOC_Os02g33770
Os.8837.1.S1_at--907--3231Chr02:20143584..20143608 (25 bp)
CAACTGCTGAAAAGAGTCCCTCTAC
LOC_Os02g33770
Os.8837.1.S1_at--901--9951Chr02:20143606..20143630 (25 bp)
TACCCCTGGTATGCGTGATATTCGA
LOC_Os02g33770
Os.8837.1.S1_at--119--71Chr02:20143625..20143649 (25 bp)
ATTCGACTTGAAAAACGCCGCCTGA
LOC_Os02g33770
Os.8837.1.S1_at--91--1351Chr02:20143877..20143901 (25 bp)
AGAGTTGCTGGTGATCCTTTTGTCT
LOC_Os02g33770
Os.8837.1.S1_at--580--4311Chr02:20143892..20143916 (25 bp)
CCTTTTGTCTTTTGCAGGAGCTTGC
LOC_Os02g33770
Os.8837.1.S1_at--698--471Chr02:20143943..20143967 (25 bp)
ATCTGTGCCCCTGTTTGAATTTTAC
LOC_Os02g33770
Os.8837.1.S1_at--950--10371Chr02:20143962..20143986 (25 bp)
TTTTACCTTAGCTAACTGCAATCGG
LOC_Os02g33770
Os.8837.1.S1_at--1124--6791Chr02:20144056..20144080 (25 bp)
GTTTAAGCCGTCCTTGTACATGCCT
LOC_Os02g33770
Os.8837.1.S1_at--276--7031Chr02:20144071..20144095 (25 bp)
GTACATGCCTGCTGTTAACTTTCTG
LOC_Os02g33770
Os.8837.1.S1_at--768--7471Chr02:20144105..20144129 (25 bp)
GTGTGTTGCTATTGACCTCTGAGTC
LOC_Os02g33770
Target Sequence 
TGAGGGATCTGGTGGTCCAACTGCTGAAAAGAGTCCCTCTACCCCTGGTATGCGTGATATTCGACTTGAAAAACGCCGCC
TGAAGATCAAAGCTCAGATGCTGAAAATTGAGCAGAAGCATTTCAAGTGGCTGAGGTTCAGCAAGGAGAAGGACAGGGAA
TTGGAGAAGATGAGACTGGAGAATGAAAAGATGAAACTGGAGAATGAGCGGTTGGAATTGGAGCTGAAGCTTAAAGAAAT
AGAGATGGGTATCAAACCAAAGAAGATTTTTAGTGATTGAAGCCTTGGAATGATAGAACTAGAAATGGTTAGAGTTGCTG
GTGATCCTTTTGTCTTTTGCAGGAGCTTGCAGATTTAGGGTCTTATATATACATTGATCTGTGCCCCTGTTTGAATTTTA
CCTTAGCTAACTGCAATCGGTCAAGTGAATGGCTATTCCAGTTGTTAAGTGTTTAAACTTGGTACTAGTTGGCCTTTCAA
ATGATAAATGTTTAAGCCGTCCTTGTACATGCCTGCTGTTAACTTTCTGCAGTTGTTTGTGTGTTGCTATTGACCTCTGA
GTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8837.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis