Browse Element(s) Details


Os.50564.1.A1_s_at

Description gb:AK121855.1
DB_XREF= gi:37991478
TID=Os.50564.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50564 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013075G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033102F24, full insert sequence.
FL= gb:AK121855.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3375011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33710Os.18672.1.S1_s_at6/112+20103243..20106357Histidine decarboxylase, putative, expressed
LOC_Os02g33720OsAffx.24559.1.S1_x_at11/112+20112353..20112961Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g33730OsAffx.24560.1.S1_s_at10/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.28660.1.S1_at3/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.12861.4.S1_at2/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.28660.1.S1_x_at1/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.12861.4.S1_x_at1/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33740Os.31602.1.S1_at11/112+20125938..20127025expressed protein
LOC_Os02g33740OsAffx.2847.1.S1_at11/112+20125938..20127025expressed protein
LOC_Os02g33750Os.50564.1.A1_s_at11/112+20129645..20134860transposon protein, putative, unclassified, expressed
LOC_Os02g33750Os.50564.2.S1_at10/112+20129645..20134860transposon protein, putative, unclassified, expressed
LOC_Os02g33760OsAffx.2848.1.S1_at11/112+20136469..20138777hypothetical protein
LOC_Os02g33770Os.8837.1.S1_at11/112+20142014..20144139expressed protein
LOC_Os02g33780Os.56326.2.S1_at11/112+20146585..20148253expressed protein
LOC_Os02g33790OsAffx.24561.1.S1_at11/112+20151874..20152900hypothetical protein
LOC_Os02g33800OsAffx.24562.1.S1_at11/112+20155442..20155786hypothetical protein
LOC_Os02g33810OsAffx.2849.1.S1_at11/112+20158053..20158741hypothetical protein
LOC_Os02g33820Os.12094.1.S1_a_at11/112+20159778..20160781ABA/WDS induced protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50564.1.A1_s_at--29--2531Chr02:20130261..20130285 (25 bp)
AACTTCTCAAATTCATATCAGTCAG
LOC_Os02g33750
Os.50564.1.A1_s_at--928--391Chr02:20130245..20130269 (25 bp)
ATCAGTCAGTAATTGAGGCTACCAA
LOC_Os02g33750
Os.50564.1.A1_s_at--423--1431Chr02:20130221..20130245 (25 bp)
AGAACAGCCATTTACCTGGGTACAT
LOC_Os02g33750
Os.50564.1.A1_s_at--676--7691Chr02:20130204..20130228 (25 bp)
GGGTACATCCATCAGCAGCATGTTC
LOC_Os02g33750
Os.50564.1.A1_s_at--167--1711Chr02:20130129..20130153 (25 bp)
ACCAAGTTCCAGAGTGACAGCCACT
LOC_Os02g33750
Os.50564.1.A1_s_at--3--5651Chr02:20130114..20130138 (25 bp)
GACAGCCACTTGGTGTTGTGTTGAT
LOC_Os02g33750
Os.50564.1.A1_s_at--472--9851Chr02:20130074..20130098 (25 bp)
TAAATTCTCCCGCATATCGCTCATC
LOC_Os02g33750
Os.50564.1.A1_s_at--496--531Chr02:20130059..20130083 (25 bp)
ATCGCTCATCAATTGTGACATACCA
LOC_Os02g33750
Os.50564.1.A1_s_at--321--5472Chr12:12799701..12799730 (25 bp)
GAACTGTAGACTATTTTGTAGCCTG
NONE
Os.50564.1.A1_s_at--894--10251Chr02:20129926..20129950 (25 bp)
TTTGTAGCCTGTATGTGAACATGAT
LOC_Os02g33750
Os.50564.1.A1_s_at--608--2711Chr02:20129748..20129772 (25 bp)
AAGCTTGTCACACTTGTGCTTTGAT
LOC_Os02g33750
Target Sequence 
AACTTCTCAAATTCATATCAGTCAGTAATTGAGGCTACCAAGAACAGCCATTTACCTGGGTACATCCATCAGCAGCATGT
TCAAGCCATGCTACGCAGCATGACTAGCTGACGATTAGCAGTGATAGCGCTCACCAAGTTCCAGAGTGACAGCCACTTGG
TGTTGTGTTGATTAGCAATTTGAATGTTAAATTCTCCCGCATATCGCTCATCAATTGTGACATACCAAGCCACCAAGGAC
ATTCAGAGCACATCCATGATCTATCGTCAGTAGCCAACGAAGTGTTAGCTCTCTTGCAATCGTCGGATGGTGGATGGTGC
AGAACTGTAGACTATTTTGTAGCCTGTATGTGAACATGATTACATGAACCATGTAGGACTAGTCTGTAGAACAGAGTAGA
GAACTAGAGATGATATCTTTGGAAGGATTAGATTTCATGCCACTCTTAGAGTTGCAGGTTTAGAAATATGCCATTATGAT
GGGGATATGTCAATAGCATAAGCTCATTTGTACAAGCTTGTCACACTTGTGCTTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50564.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis