Browse Element(s) Details


OsAffx.24559.1.S1_x_at

Description tigr:9630.m03203
TID=OsAffx.24559.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BT004771 At3g10910
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3372011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33700OsAffx.12337.1.S1_at10/112+20096900..20098594hypothetical protein
LOC_Os02g33700Os.55134.1.S1_at3/112+20096900..20098594hypothetical protein
LOC_Os02g33700Os.55296.1.S1_x_at2/112+20096900..20098594hypothetical protein
LOC_Os02g33710Os.18672.1.S1_s_at6/112+20103243..20106357Histidine decarboxylase, putative, expressed
LOC_Os02g33720OsAffx.24559.1.S1_x_at11/112+20112353..20112961Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g33730OsAffx.24560.1.S1_s_at10/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.28660.1.S1_at3/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.12861.4.S1_at2/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.28660.1.S1_x_at1/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.12861.4.S1_x_at1/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33740Os.31602.1.S1_at11/112+20125938..20127025expressed protein
LOC_Os02g33740OsAffx.2847.1.S1_at11/112+20125938..20127025expressed protein
LOC_Os02g33750Os.50564.1.A1_s_at11/112+20129645..20134860transposon protein, putative, unclassified, expressed
LOC_Os02g33750Os.50564.2.S1_at10/112+20129645..20134860transposon protein, putative, unclassified, expressed
LOC_Os02g33760OsAffx.2848.1.S1_at11/112+20136469..20138777hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24559.1.S1_x_at--420--1051Chr02:20112420..20112444 (25 bp)
AGGTGATTGCCGGACAGGAGGCGCC
LOC_Os02g33720
OsAffx.24559.1.S1_x_at--362--4251Chr02:20112474..20112498 (25 bp)
CCGGGACGAGCAGCTTCGACGCGAA
LOC_Os02g33720
OsAffx.24559.1.S1_x_at--640--4071Chr02:20112480..20112504 (25 bp)
CGAGCAGCTTCGACGCGAACGTGGT
LOC_Os02g33720
OsAffx.24559.1.S1_x_at--527--4111Chr02:20112495..20112519 (25 bp)
CGAACGTGGTGATGATCCTGGCCGT
LOC_Os02g33720
OsAffx.24559.1.S1_x_at--790--1911Chr02:20112498..20112522 (25 bp)
ACGTGGTGATGATCCTGGCCGTGCT
LOC_Os02g33720
OsAffx.24559.1.S1_x_at--497--8311Chr02:20112549..20112573 (25 bp)
GGCTCAACTCGATCGTGCGGTGCGC
LOC_Os02g33720
OsAffx.24559.1.S1_x_at--1091--9151Chr02:20112569..20112593 (25 bp)
TGCGCGCTCCGGTGCTCGAGCGGCG
LOC_Os02g33720
OsAffx.24559.1.S1_x_at--22--8431Chr02:20112593..20112617 (25 bp)
GGCCGGATGATGATGTCTTCGTCGT
LOC_Os02g33720
OsAffx.24559.1.S1_x_at--467--631Chr02:20112636..20112660 (25 bp)
ATGACGGCGAGCTGGGTCCGTCGGC
LOC_Os02g33720
OsAffx.24559.1.S1_x_at--667--7571Chr02:20112699..20112723 (25 bp)
GGGCGATGCCGACGATGGTGTACTC
LOC_Os02g33720
OsAffx.24559.1.S1_x_at--1071--4651Chr02:20112786..20112810 (25 bp)
GCGTGCGCGTGCTGCCCAAGTGCAA
LOC_Os02g33720
Target Sequence 
AGGTGATTGCCGGACAGGAGGCGCCGGCCGGCGGCGACGTCGTGGCGGGGCCCGCCGGGACGAGCAGCTTCGACGCGAAC
GTGGTGATGATCCTGGCCGTGCTCCTGTGCGCGCTCATCTGCGCGCTGGGGCTCAACTCGATCGTGCGGTGCGCGCTCCG
GTGCTCGAGCGGCGGCCGGATGATGATGTCTTCGTCGTCGTCGGCGGCGGCGGGAGATGACGGCGAGCTGGGTCCGTCGG
CGGCGGCGCAGGCCGCCGGGGTGCGGCGGAAGGCGCTGCGGGCGATGCCGACGATGGTGTACTCGGCGGCGGGCGGGCCG
AGCCCGGCGTGCGCCATCTGCCTCGCCGACCTGGAGCCCGGCGAGCGCGTGCGCGTGCTGCCCAAGTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24559.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis