Browse Element(s) Details


Os.55296.1.S1_x_at

Description gb:AK107820.1
DB_XREF= gi:32993029
TID=Os.55296.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55296 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-F12, full insert sequence.
FL= gb:AK107820.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g337002/11hypothetical protein
LOC_Os02g369741/1114-3-3-like protein B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33680NANA2+20076291..20077808U-box domain containing protein, expressed
LOC_Os02g33690OsAffx.24558.1.S1_at11/112+20084348..20084722hypothetical protein
LOC_Os02g33700OsAffx.12337.1.S1_at10/112+20096900..20098594hypothetical protein
LOC_Os02g33700Os.55134.1.S1_at3/112+20096900..20098594hypothetical protein
LOC_Os02g33700Os.55296.1.S1_x_at2/112+20096900..20098594hypothetical protein
LOC_Os02g33710Os.18672.1.S1_s_at6/112+20103243..20106357Histidine decarboxylase, putative, expressed
LOC_Os02g33720OsAffx.24559.1.S1_x_at11/112+20112353..20112961Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g33730OsAffx.24560.1.S1_s_at10/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.28660.1.S1_at3/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.12861.4.S1_at2/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.28660.1.S1_x_at1/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.12861.4.S1_x_at1/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005635cellular_componentnuclear envelope
GO:0005737cellular_componentcytoplasm
GO:0005886cellular_componentplasma membrane
GO:0009570cellular_componentchloroplast stroma
GO:0005515molecular_functionprotein binding
GO:0045309molecular_functionprotein phosphorylated amino acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55296.1.S1_x_at--385--3351Chr07:6374963..6374987 (25 bp)
CACGCCTTTCCCGACGGTGGGAGAG
NONE
Os.55296.1.S1_x_at--920--8151Chr07:6374916..6374940 (25 bp)
GGAAAGGCTGCAGCTCTGGCGTCCT
NONE
Os.55296.1.S1_x_at--387--10771Chr07:6374691..6374715 (25 bp)
TTGACCTGCGCCTGCTTCTTCTTGT
NONE
Os.55296.1.S1_x_at--969--10651Chr07:6374653..6374677 (25 bp)
TTCCGCGGCTTCACGTTGGATCTGG
NONE
Os.55296.1.S1_x_at--165--9011Chr07:6374612..6374636 (25 bp)
TGAATGGCTCGAAGCCGACGGCGGC
NONE
Os.55296.1.S1_x_at--861--10291Chr07:6374544..6374568 (25 bp)
TTTCTTTTCTCTACCAAATTACTCG
NONE
Os.55296.1.S1_x_at--1055--9553Chr02:22327506..22327531 (23 bp)
TCTTTTCTCTACCAAATTACTCGAG
LOC_Os02g36974
Os.55296.1.S1_x_at--481--10491Chr07:6374482..6374506 (25 bp)
TTCTTCCTTTCCTCTACCAAAGGAT
NONE
Os.55296.1.S1_x_at--979--3671Chr07:6374476..6374500 (25 bp)
CTTTCCTCTACCAAAGGATTTTGTG
NONE
Os.55296.1.S1_x_at--880--7933Chr06:14917681..14917727 (25 bp)
GGATTTTGTGTTCTCTTTCTCAGAT
NONE
Os.55296.1.S1_x_at--1092--7413Chr06:14917711..14917734 (24 bp)
GTGTTCTCTTTCTCAGATTTTAATG
NONE
Target Sequence 
CACGCCTTTCCCGACGGTGGGAGAGGCGGGGGCGGCGGAGGAGGAGGGGAAAGGCTGCAGCTCTGGCGTCCTCCTCGCCT
CCCGTCGTCCTCGTCGCCTCCCTCGCCGCGCCTCCTTCTCCGGCTGCTGCTGCTCAGGCGGCTCCACCGCGGCGACCTCA
CCGAGGGACGCCTCCACCTCGAGCAGCCGCCGCCGCCGCGAGGAGGAGGAGCGGGTGGGCCGGGCCGCCGGCGGCGGCAC
GGAGGAGGTGCGGGTGCAGGTGCGGCGGGGGCTTGACCTGCGCCTGCTTCTTCTTGTCGTCGTCGGCGGCTTCCGCGGCT
TCACGTTGGATCTGGCCGGGGTCGGCGGGAGTGAATGGCTCGAAGCCGACGGCGGCCGGCGGCGGGAGCGGACGGCTTCT
CCTCCTCGCCGATTTCCCCTTTCTTTTCTCTACCAAATTACTCGAGAAATTTTGTTTGTTTGGTCTACATCTGTGGTGGT
TTTCTTCCTTTCCTCTACCAAAGGATTTTGTGTTCTCTTTCTCAGATTTTAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55296.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis