Browse Element(s) Details


Os.12638.1.S1_at

Description gb:BI808037
DB_XREF= gi:15855225
DB_XREF=B009D08
CLONE=B009D08
TID=Os.12638.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.12638 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cyclin-dependent kinase B1-1 (P0696G06.32), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6716011/11Cell division control protein 2 homolog C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67100OsAffx.23951.1.S1_x_at11/111+39280512..39286189expressed protein
LOC_Os01g67100OsAffx.23951.3.S1_x_at11/111+39280512..39286189expressed protein
LOC_Os01g67110Os.6275.1.S1_at11/111+39286278..39287084expressed protein
LOC_Os01g67120Os.11976.1.S1_a_at10/111+39288157..39292980Rhodanese-like domain containing protein, expressed
LOC_Os01g67134Os.9738.1.S1_at11/111+39295133..3930328560S ribosomal protein L5-1, putative, expressed
LOC_Os01g67150OsAffx.11768.2.S1_at11/111+39304460..39307080hypothetical protein
LOC_Os01g67150OsAffx.11768.1.S1_s_at11/111+39304460..39307080hypothetical protein
LOC_Os01g67150OsAffx.11768.1.S1_at2/111+39304460..39307080hypothetical protein
LOC_Os01g67160Os.12638.1.S1_at11/111+39308151..39311021Cell division control protein 2 homolog C, putative, expressed
LOC_Os01g67170Os.15584.1.S1_at11/111+39313528..39317337expressed protein
LOC_Os01g67180Os.10377.1.S1_at9/111+39317818..39320652Ribonuclease T2 family protein, expressed
LOC_Os01g67180Os.55134.1.S1_at1/111+39317818..39320652Ribonuclease T2 family protein, expressed
LOC_Os01g67190Os.8919.2.S1_x_at11/111+39321325..39324319Ribonuclease T2 family protein, expressed
LOC_Os01g67190Os.8919.1.S1_at10/111+39321325..39324319Ribonuclease T2 family protein, expressed
LOC_Os01g67200NANA1+39325126..39326849ribosomal protein L13 family protein, putative
LOC_Os01g67210Os.37429.1.S1_at10/111+39327531..39329591pentatricopeptide, putative, expressed
LOC_Os01g67220Os.18285.1.S1_at11/111+39331855..39337475Glycosyl hydrolase family 1 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0000086biological_processG2/M transition of mitotic cell cycle
GO:0000087biological_processM phase of mitotic cell cycle
GO:0007346biological_processregulation of progression through mitotic cell cycle
GO:0009826biological_processunidimensional cell growth
GO:0016572biological_processhistone phosphorylation
GO:0042023biological_processDNA endoreduplication
GO:0000307cellular_componentcyclin-dependent protein kinase holoenzyme complex
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
GO:0030332molecular_functioncyclin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12638.1.S1_at--991--5671Chr01:39309617..39309641 (25 bp)
GACATTTGGTCCGTTGGTTGCATCT
LOC_Os01g67160
Os.12638.1.S1_at--604--2691Chr01:39309191..39309215 (25 bp)
AAGCTCTTTTTCCAGGTGACTCTGA
LOC_Os01g67160
Os.12638.1.S1_at--713--6671Chr01:39308840..39309181 (25 bp)
GTTGCTTCACATTTTCAGGTTGTTG
LOC_Os01g67160
Os.12638.1.S1_at--861--6131Chr01:39308774..39308798 (25 bp)
GAGGGACTGGCATGAGTTTCCACAG
LOC_Os01g67160
Os.12638.1.S1_at--573--10431Chr01:39308734..39308758 (25 bp)
TTAGAACGTCAAGTCCCATCATTGG
LOC_Os01g67160
Os.12638.1.S1_at--1069--2291Chr01:39308423..39308447 (25 bp)
AAAGGCTGCTATGGAACACCCCTAC
LOC_Os01g67160
Os.12638.1.S1_at--118--3791Chr01:39308389..39308413 (25 bp)
CTCGACAAGTCCCAGTTCTAGTTTG
LOC_Os01g67160
Os.12638.1.S1_at--1051--8931Chr01:39308353..39308377 (25 bp)
TGACGAAGTCCATGTTCTGTTGTGT
LOC_Os01g67160
Os.12638.1.S1_at--312--9891Chr01:39308278..39308302 (25 bp)
TACTTAGCACCCTACTTTGTGATCC
LOC_Os01g67160
Os.12638.1.S1_at--294--951Chr01:39308249..39308273 (25 bp)
AGGAAATCCGTTTGCCATCTAGGCA
LOC_Os01g67160
Os.12638.1.S1_at--672--8631Chr01:39308199..39308223 (25 bp)
TGGGTTTGTTTCTATGCTGTATGGC
LOC_Os01g67160
Target Sequence 
GACATTTGGTCCGTTGGTTGCATCTTCGCTGAAATGGTCAGAANACAAGCTCTTTTTCCAGGTGACTCTGAGTTGCAACA
GTTGCTTCACATTTTCAGGTTGTTGGGAACTCCTACTGAGGANCANTGNCCTGGAGTAACTGATTTGAGGGACTGGCATG
AGTTTCCACAGTGGAANCCACAGATTTTAGAACGTCAAGTCCCATCATTGGAGCCTGAAGGAGTTGACCTTTTATCGAAA
ATGCNCCANGTATAACCCNAGCAANTNGGATCNTCANCAAAGGCTGCTATGGAACACCCCTACTTCGACAGCCTCGACAA
GTCCCAGTTCTAGTTTGTACCATGTGATTGACGAAGTCCATGTTCTGTTGTGTCATTTGATTATAAACGTGTTGCTGTTA
GCAGCAAGGAAATTCGTTTTGCCTACTTAGCACCCTACTTTGTGATCCANCAAGGAAATCCGTTTGCCATCTAGGCAACT
TGAATNCAGTTTGAATGTAAAATGGGTTTGTTTCTATGCTGTATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis