Browse Element(s) Details


Os.26897.1.S1_at

Description gb:CA753251
DB_XREF= gi:25797290
DB_XREF=00210009044.D06_010629149P.scf
CLONE=00210009044.D06_010629149P.scf
TID=Os.26897.1
CNT=28
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.26897 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-H04, full insert sequence
FL= gb:AK105662.1 gb:AK103895.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2039011/11expressed protein
LOC_Os05g070903/11Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g20350Os.45173.1.S1_x_at1/1112+11876779..11884028retrotransposon protein, putative, unclassified
LOC_Os12g20350OsAffx.20628.1.S1_at1/1112+11876779..11884028retrotransposon protein, putative, unclassified
LOC_Os12g20350Os.47130.4.A1_x_at1/1112+11876779..11884028retrotransposon protein, putative, unclassified
LOC_Os12g20360OsAffx.19759.1.S1_at10/1112+11886841..11887374hypothetical protein
LOC_Os12g20370OsAffx.31821.1.S1_at11/1112+11889952..11892524Zinc knuckle family protein
LOC_Os12g20380OsAffx.31822.1.S1_at10/1112+11898125..11899921hypothetical protein
LOC_Os12g20390Os.26897.1.S1_at11/1112+11902032..11904607expressed protein
LOC_Os12g20390OsAffx.29424.1.S1_at4/1112+11902032..11904607expressed protein
LOC_Os12g20400OsAffx.26327.1.S1_s_at11/1112+11907351..11910719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g20400Os.15412.1.S1_x_at8/1112+11907351..11910719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g20400OsAffx.26327.1.S1_at7/1112+11907351..11910719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g20410Os.10969.1.S1_at11/1112+11912727..11915931MAR-binding protein, putative, expressed
LOC_Os12g20420OsAffx.11270.1.S1_x_at3/1112+11920621..11923876SWIM zinc finger family protein
LOC_Os12g20420OsAffx.11270.1.S1_at3/1112+11920621..11923876SWIM zinc finger family protein
LOC_Os12g20420OsAffx.31552.2.S1_at2/1112+11920621..11923876SWIM zinc finger family protein
LOC_Os12g20420OsAffx.31552.3.S1_x_at1/1112+11920621..11923876SWIM zinc finger family protein
LOC_Os12g20430NANA12+11926783..11928230retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006552biological_processleucine catabolism
GO:0006635biological_processfatty acid beta-oxidation
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0046459biological_processshort-chain fatty acid metabolism
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0005777cellular_componentperoxisome
GO:0003997molecular_functionacyl-CoA oxidase activity
GO:0008470molecular_functionisovaleryl-CoA dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26897.1.S1_at--932--9291Chr12:11903862..11903886 (25 bp)
TCCCCGTGTTAGTATGCCTTTCATA
LOC_Os12g20390
Os.26897.1.S1_at--851--6171Chr12:11903690..11903714 (25 bp)
GAGGAGATGTCACCCGAAGTTGTCT
LOC_Os12g20390
Os.26897.1.S1_at--104--5351Chr12:11903675..11903699 (25 bp)
GAAGTTGTCTCGGAAGCCGCAATGA
LOC_Os12g20390
Os.26897.1.S1_at--775--4771Chr12:11902768..11902792 (25 bp)
GCTGCTGGCGTTGGATGTTGCACTC
LOC_Os12g20390
Os.26897.1.S1_at--291--10711Chr12:11902688..11902712 (25 bp)
TTGCTTTCCCGGTGTTCTCAGGTTC
LOC_Os12g20390
Os.26897.1.S1_at--567--9631Chr12:11902671..11902695 (25 bp)
TCAGGTTCTCGGTTTCCCATTATTT
LOC_Os12g20390
Os.26897.1.S1_at--289--7712Chr12:11902624..11902648 (25 bp)
GGGTGAAACTGTCTTGGCCATCTAA
LOC_Os12g20390
Os.26897.1.S1_at--314--3451Chr12:11902567..11902591 (25 bp)
CAGTCGGCCTTTGTTGATTCGTAGT
LOC_Os12g20390
Os.26897.1.S1_at--126--6951Chr12:11902547..11902571 (25 bp)
GTAGTTATCTTCAGTCTTGGGCAGC
LOC_Os12g20390
Os.26897.1.S1_at--142--7552Chr12:11902529..11902553 (25 bp)
GGGCAGCTTAATCTGGCTCCAAGTT
LOC_Os12g20390
Os.26897.1.S1_at--773--2812Chr12:11902509..11902533 (25 bp)
AAGTTGGCAGCAAGCAGTCCCTGTT
LOC_Os12g20390
Target Sequence 
TCCCCGTGTTAGTATGCCTTTCATATGTTTTTAATGTATTTGTGCTGTTCTTATAATGTAGTTTTGCACTTATGATAGCA
TGTTACTTGTGCTTGCAAGGTTGGGTGGGTTGTCACTGTGGTTGGAGCTGGTTGTTGAGCTGATTGGAGTCAGAGATGGT
GGCCAAGATGGAGAGGAGATGTCACCCGAAGTTGTCTCGGAAGCCGCAATGAAGGCGGAGATGGAGGCGGCAAGGTGGGG
CTGCTGGCGTTGGATGTTGCACTCGCGTTCCCGCAGGCCACGACGTCCCAGTTCCCGCCCGCCGGTGAGACCTCCTCTCT
TGCTTTCCCGGTGTTCTCAGGTTCTCGGTTTCCCATTATTTTAAATAATGAGATATTATGATTGGGTGAAACTGTCTTGG
CCATCTAATTGGAGTATTTGAGAGAGGTGTGTGCACTGTGCAGTCGGCCTTTGTTGATTCGTAGTTATCTTCAGTCTTGG
GCAGCTTAATCTGGCTCCAAGTTGGCAGCAAGCAGTCCCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26897.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis