Browse Element(s) Details


OsAffx.31552.3.S1_x_at

Description tigr:9640.m00142
TID=OsAffx.31552.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g017705/11hypothetical protein
LOC_Os01g034525/11hypothetical protein
LOC_Os12g108004/11transposon protein, putative, Mutator sub-class
LOC_Os12g273903/11hypothetical protein
LOC_Os12g215102/11Transposable element protein, putative, MuDR
LOC_Os12g204201/11SWIM zinc finger family protein
LOC_Os05g068801/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01710Os.12011.1.S1_at10/115+415052..421312Transcription initiation factor IIA gamma chain, putative, expressed
LOC_Os05g01730Os.12212.1.S1_at11/115+424405..426820Drought induced 19 protein containing protein, expressed
LOC_Os05g01750Os.7440.1.S1_at11/115+426846..431252pseudouridylate synthase TruB family protein, putative, expressed
LOC_Os05g01760Os.20884.1.S1_at11/115+432034..436298expressed protein
LOC_Os05g01770OsAffx.31552.3.S1_x_at5/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.31552.2.S1_at2/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.29148.1.S1_at1/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.11270.1.S1_at1/115+443126..446643hypothetical protein
LOC_Os05g01780Os.38894.1.S1_s_at11/115+449442..454325ZIK1 protein, putative, expressed
LOC_Os05g01780Os.49298.1.S1_at11/115+449442..454325ZIK1 protein, putative, expressed
LOC_Os05g01790Os.50154.1.S1_s_at11/115+456051..457172expressed protein
LOC_Os05g01790Os.50154.1.S1_at10/115+456051..457172expressed protein
LOC_Os05g01810Os.7098.1.S1_at11/115+464100..466404Vignain precursor, putative, expressed
LOC_Os05g01820Os.3430.1.S1_at11/115+470301..472374Cytochrome b5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31552.3.S1_x_at--839--6931Chr12:771794..771818 (25 bp)
GTAGATACAGAGAACCCACAAAATG
NONE
OsAffx.31552.3.S1_x_at--1128--5631Chr12:771818..771842 (25 bp)
GACAGAACACGTCCATATGCACGTA
NONE
OsAffx.31552.3.S1_x_at--656--5451Chr12:771884..771908 (25 bp)
GAACGTCAGATTGCTGCGGAAGCTT
NONE
OsAffx.31552.3.S1_x_at--99--4314Chr12:771928..771952 (25 bp)
CCTAGGACTCCCCACATGGCGGGAA
NONE
OsAffx.31552.3.S1_x_at--295--10074Chr12:771930..771954 (25 bp)
TAGGACTCCCCACATGGCGGGAACG
NONE
OsAffx.31552.3.S1_x_at--316--8115Chr12:771932..771956 (25 bp)
GGACTCCCCACATGGCGGGAACGTC
NONE
OsAffx.31552.3.S1_x_at--875--3315Chr12:771940..771964 (25 bp)
CACATGGCGGGAACGTCCAGAGTGT
NONE
OsAffx.31552.3.S1_x_at--474--7111NONE
GTCAGGTGATAAGGGCAATCCAAGG
NONE
OsAffx.31552.3.S1_x_at--1143--3017Chr12:772521..772545 (25 bp)
AATCCAAGGAGGTGCGCATTCATTA
NONE
OsAffx.31552.3.S1_x_at--864--7296Chr12:772532..772556 (25 bp)
GTGCGCATTCATTATGGATCGACAA
NONE
OsAffx.31552.3.S1_x_at--1027--7154Chr12:772593..773089 (25 bp)
GTCTGAAACACAGGTTTATGTAAAA
NONE
Target Sequence 
GTAGATACAGAGAACCCACAAAATGACAGAACACGTCCATATGCACGTAGTGAATCAAGATCGGACTACCTCAGGCGGAA
GGATGAGCATGAACGTCAGATTGCTGCGGAAGCTTTAGAATGGCAAGTAAACCCCCTAGGACTCCCCACATGGCGGGAAC
GTCCAGAGTGTCGTTGTGGTGACCGTTGTCAGGTGATAAGGGCAATCCAAGGAGGTGCGCATTCATTATGGATCGACAAT
GTCAATCCTACATATGATGGCCAAAAGATAACTGAGTCTGAAACACAGGTTTATGTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31552.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis