Browse Element(s) Details


Os.38894.1.S1_s_at

Description gb:AY336987.1
DB_XREF= gi:33243045
TID=Os.38894.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38894 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) disease relative signal 1 mRNA, complete cds.
PROD=disease relative signal 1
FL= gb:AY336987.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0178011/11ZIK1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01730Os.12212.1.S1_at11/115+424405..426820Drought induced 19 protein containing protein, expressed
LOC_Os05g01750Os.7440.1.S1_at11/115+426846..431252pseudouridylate synthase TruB family protein, putative, expressed
LOC_Os05g01760Os.20884.1.S1_at11/115+432034..436298expressed protein
LOC_Os05g01770OsAffx.31552.3.S1_x_at5/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.31552.2.S1_at2/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.29148.1.S1_at1/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.11270.1.S1_at1/115+443126..446643hypothetical protein
LOC_Os05g01780Os.38894.1.S1_s_at11/115+449442..454325ZIK1 protein, putative, expressed
LOC_Os05g01780Os.49298.1.S1_at11/115+449442..454325ZIK1 protein, putative, expressed
LOC_Os05g01790Os.50154.1.S1_s_at11/115+456051..457172expressed protein
LOC_Os05g01790Os.50154.1.S1_at10/115+456051..457172expressed protein
LOC_Os05g01810Os.7098.1.S1_at11/115+464100..466404Vignain precursor, putative, expressed
LOC_Os05g01820Os.3430.1.S1_at11/115+470301..472374Cytochrome b5, putative, expressed
LOC_Os05g01830OsAffx.26681.1.S1_at11/115+474913..476128hypothetical protein
LOC_Os05g01840OsAffx.29799.2.S1_x_at10/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.2.S1_at10/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.1.S1_at6/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.1.S1_x_at5/115+477136..478482hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007623biological_processcircadian rhythm
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38894.1.S1_s_at--971--2511Chr05:453381..453405 (25 bp)
AACTTCTGAGTTGCGTAATGAGCCT
LOC_Os05g01780
Os.38894.1.S1_s_at--1078--5851Chr05:453400..453424 (25 bp)
GAGCCTAATGCTACACATAATGGTT
LOC_Os05g01780
Os.38894.1.S1_s_at--721--1731Chr05:453437..453461 (25 bp)
ACCTTCCCTCCGGACATAAGTATTG
LOC_Os05g01780
Os.38894.1.S1_s_at--740--331Chr05:453452..453476 (25 bp)
ATAAGTATTGGTCGGACTCGCCCAG
LOC_Os05g01780
Os.38894.1.S1_s_at--560--7191Chr05:453462..453486 (25 bp)
GTCGGACTCGCCCAGAAGAAACATT
LOC_Os05g01780
Os.38894.1.S1_s_at--908--2071Chr05:453482..453506 (25 bp)
ACATTGAAATGTCTCACTCCGCAGT
LOC_Os05g01780
Os.38894.1.S1_s_at--738--1991Chr05:453497..453521 (25 bp)
ACTCCGCAGTCGAACCACATATTGG
LOC_Os05g01780
Os.38894.1.S1_s_at--50--8671Chr05:453591..453615 (25 bp)
TGTGGACTTGCCAAACCCATCTATG
LOC_Os05g01780
Os.38894.1.S1_s_at--955--9991Chr05:453868..453892 (25 bp)
TAGCTGCAACACATTATCTTCACCG
LOC_Os05g01780
Os.38894.1.S1_s_at--843--10351Chr05:453899..453923 (25 bp)
TTTTTTGTACCGGTGCCATGGAGCT
LOC_Os05g01780
Os.38894.1.S1_s_at--1011--2311Chr05:453945..453969 (25 bp)
AAAGGTGGTCTCAGCTGTTCACTGT
LOC_Os05g01780
Target Sequence 
AACTTCTGAGTTGCGTAATGAGCCTAATGCTACACATAATGGTTTTGTCCAAGAACACCTTCCCTCCGGACATAAGTATT
GGTCGGACTCGCCCAGAAGAAACATTGAAATGTCTCACTCCGCAGTCGAACCACATATTGGTGGTAATATGCCTAATGGG
ATATTGAAGAAGAATGACACTGATGACACAGTCAGCAATCTTGGCACTTCTGTGGACTTGCCAAACCCATCTATGATTGA
CAGGAAATCTGGAGTAGCTTCTAGGTTAGTGAATTTGCTAGCTCAGCAGCAAGAGGAGCTCAACGTGCTGCGAAGGAAGC
ACAAGGCTGACATAGAAGTCATCTTGAAAGGTGTGCCTGAAGAGCATCGCGAAGAAACCTTAACTAGGTGCCGGCTGAAG
GCAGATGAGAGAAACAGATCAGACAAACCTTAGCTGCAACACATTATCTTCACCGTGTGATTTTTTTGTACCGGTGCCAT
GGAGCTGTTTAGAACTATTGTTGTGCAAAAGGTGGTCTCAGCTGTTCACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38894.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis