Browse Element(s) Details


Os.12212.1.S1_at

Description gb:AY335486.1
DB_XREF= gi:33151122
TID=Os.12212.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12212 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) drought-induced protein DI1 mRNA, complete cds.
PROD=drought-induced protein DI1
FL= gb:AK121060.1 gb:AY335486.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0173011/11Drought induced 19 protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01700Os.26934.1.S1_at10/115+399242..409655peroxisomal ABC transporter PXA1, putative, expressed
LOC_Os05g01700Os.46404.1.S1_x_at1/115+399242..409655peroxisomal ABC transporter PXA1, putative, expressed
LOC_Os05g01710Os.12011.1.S1_at10/115+415052..421312Transcription initiation factor IIA gamma chain, putative, expressed
LOC_Os05g01730Os.12212.1.S1_at11/115+424405..426820Drought induced 19 protein containing protein, expressed
LOC_Os05g01750Os.7440.1.S1_at11/115+426846..431252pseudouridylate synthase TruB family protein, putative, expressed
LOC_Os05g01760Os.20884.1.S1_at11/115+432034..436298expressed protein
LOC_Os05g01770OsAffx.31552.3.S1_x_at5/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.31552.2.S1_at2/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.29148.1.S1_at1/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.11270.1.S1_at1/115+443126..446643hypothetical protein
LOC_Os05g01780Os.38894.1.S1_s_at11/115+449442..454325ZIK1 protein, putative, expressed
LOC_Os05g01780Os.49298.1.S1_at11/115+449442..454325ZIK1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009785biological_processblue light signaling pathway
GO:0010161biological_processred light signaling pathway
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12212.1.S1_at--846--10291Chr05:426137..426161 (25 bp)
TTTCTTGCAAGCCAAGCTCAGCAGC
LOC_Os05g01730
Os.12212.1.S1_at--42--1331Chr05:426183..426207 (25 bp)
AGAGGACTCCTACTTTGAAGCACCC
LOC_Os05g01730
Os.12212.1.S1_at--520--10751Chr05:426197..426221 (25 bp)
TTGAAGCACCCTCACACTGCATGGG
LOC_Os05g01730
Os.12212.1.S1_at--597--591Chr05:426320..426344 (25 bp)
ATGCCGAGGGCCATGGTTCATCTTC
LOC_Os05g01730
Os.12212.1.S1_at--433--511Chr05:426531..426555 (25 bp)
ATCGAGTTCGTGAAGCAGATGCTGA
LOC_Os05g01730
Os.12212.1.S1_at--552--8771Chr05:426581..426605 (25 bp)
TGTTTCTCTAGGGTTCATTTCGGCA
LOC_Os05g01730
Os.12212.1.S1_at--1105--3571Chr05:426596..426620 (25 bp)
CATTTCGGCAGTTTGGGTAGGCTTT
LOC_Os05g01730
Os.12212.1.S1_at--383--6931Chr05:426612..426636 (25 bp)
GTAGGCTTTTCAGGATTTGGGACAA
LOC_Os05g01730
Os.12212.1.S1_at--475--3131Chr05:426658..426682 (25 bp)
AATTTATGCTGACCTTCGGCACATG
LOC_Os05g01730
Os.12212.1.S1_at--420--6011Chr05:426756..426780 (25 bp)
GAGAGACAACCAAGTTATACCTTTG
LOC_Os05g01730
Os.12212.1.S1_at--953--6611Chr05:426780..426804 (25 bp)
GTTGGACATCACCTTTACCAGTAAT
LOC_Os05g01730
Target Sequence 
TTTCTTGCAAGCCAAGCTCAGCAGCAGCTGACAAGGGATCATATGAAGAGGACTCCTACTTTGAAGCACCCTCACACTGC
ATGGGCAGGCCGGCTCCTGATTCCTCTCCTGACCCTCTTCTCTCCCAGTTCATCTGCTGCAGCCTCGCTCCTCCGGTCGA
TTCGCCGCGCCGCAGCGAAGCCGATGCCGAGGGCCATGGTTCATCTTCCTCAGATGATCAAAAAAGGAGAGAGCAGGGTG
TGATGGATGATGCATCAAAGGAGGAGCTTGAGGAGAGGTTGCAGAGAATCGAGTTCGTGAAGCAGATGCTGATGACAACA
ATTGCTTATTAGAAGACTGTTTCTCTAGGGTTCATTTCGGCAGTTTGGGTAGGCTTTTCAGGATTTGGGACAAGTGCAGA
ATGATGTGCCATTTAATTTATGCTGACCTTCGGCACATGTATACCTACAATGTTTGGATATCTATATAATCATCAATCGT
AATCCTATCAATTTAACCTTAGTTATTATGATGAGAGACAACCAAGTTATACCTTTGTTGGACATCACCTTTACCAGTAA
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis