Browse Element(s) Details


Os.12011.1.S1_at

Description gb:AK065182.1
DB_XREF= gi:32975200
TID=Os.12011.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12011 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002D19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002D19, full insert sequence.
FL= gb:AK065182.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0171010/11Transcription initiation factor IIA gamma chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01690Os.16880.1.S1_at11/115+389137..397564expressed protein
LOC_Os05g01700Os.26934.1.S1_at10/115+399242..409655peroxisomal ABC transporter PXA1, putative, expressed
LOC_Os05g01700Os.46404.1.S1_x_at1/115+399242..409655peroxisomal ABC transporter PXA1, putative, expressed
LOC_Os05g01710Os.12011.1.S1_at10/115+415052..421312Transcription initiation factor IIA gamma chain, putative, expressed
LOC_Os05g01730Os.12212.1.S1_at11/115+424405..426820Drought induced 19 protein containing protein, expressed
LOC_Os05g01750Os.7440.1.S1_at11/115+426846..431252pseudouridylate synthase TruB family protein, putative, expressed
LOC_Os05g01760Os.20884.1.S1_at11/115+432034..436298expressed protein
LOC_Os05g01770OsAffx.31552.3.S1_x_at5/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.31552.2.S1_at2/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.29148.1.S1_at1/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.11270.1.S1_at1/115+443126..446643hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006367biological_processtranscription initiation from RNA polymerase II promoter
GO:0005672cellular_componenttranscription factor TFIIA complex
GO:0003702molecular_functionRNA polymerase II transcription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12011.1.S1_at--1110--9311Chr05:415523..415547 (25 bp)
TCGCCATTCAAGTTCTTGTCCAGTT
LOC_Os05g01710
Os.12011.1.S1_at--190--2851Chr05:415647..415670 (24 bp)
AAGTCTATGACGGAAGCCTTGGAGA
LOC_Os05g01710
Os.12011.1.S1_at--735--3211NONE
CAAGGTTTCTATCAAGGGCCACCTG
NONE
Os.12011.1.S1_at--1045--4271Chr05:420800..420824 (25 bp)
CCTGCACACTTACAGGTTCTGTGAC
LOC_Os05g01710
Os.12011.1.S1_at--394--751Chr05:420826..420850 (25 bp)
ATGTATGGACATTCATCTTGACTGA
LOC_Os05g01710
Os.12011.1.S1_at--396--2811Chr05:420897..420921 (25 bp)
AAGATTGTGGCCTGTGATTCCAAAC
LOC_Os05g01710
Os.12011.1.S1_at--609--7411Chr05:420910..420934 (25 bp)
GTGATTCCAAACTACTCAGCCAATA
LOC_Os05g01710
Os.12011.1.S1_at--507--331Chr05:420940..420964 (25 bp)
ATAACTGCGAGGTCAGGGTTTGCCT
LOC_Os05g01710
Os.12011.1.S1_at--475--7871Chr05:420956..420980 (25 bp)
GGTTTGCCTGGTATTTGTTAGTCTC
LOC_Os05g01710
Os.12011.1.S1_at--477--8771Chr05:420971..420995 (25 bp)
TGTTAGTCTCTTCTGCTAGACCTGG
LOC_Os05g01710
Os.12011.1.S1_at--844--7971Chr05:421283..421307 (25 bp)
GGATCCTATGTTAATGGTACCTTTA
LOC_Os05g01710
Target Sequence 
TCGCCATTCAAGTTCTTGTCCAGTTTGATAAGTCTATGACGGAAGCCTTGGAGAACCAAGTCAAGAGCAAGGTTTCTATC
AAGGGCCACCTGCACACTTACAGGTTCTGTGACAATGTATGGACATTCATCTTGACTGAAGCATCATTCAAGAACGAGGA
GACTACAGAACAAGTTGGCAAGGTGAAGATTGTGGCCTGTGATTCCAAACTACTCAGCCAATAAATTGATAACTGCGAGG
TCAGGGTTTGCCTGGTATTTGTTAGTCTCTTCTGCTAGACCTGGCTCCGCCTGAAGTGTACTGTACCACCACATTGTTTG
TTTCATAATCAATGTGTGTCAATACAATCGTATGTGCTACCAGAGTATATCACAGCAGCAACTGTTTTAATTTGTATGCT
TATGTAATTGTTATGCTACTGCTGTGTTGATAATGTGATATAAATGACTAAACGATGAGTAGTAGAAATTGTGCGGAGTC
ACCCTCCCCCTTCCTCATTTCTGAACCCTTTGGTTCTGTNTGACTCTTTGTATGTAACATGAACAAATACCTCCTTTCCN
GTCTTTTTTTTGGATCCTATGTTAATGGTACCTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12011.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis