Browse Element(s) Details


Os.7440.1.S1_at

Description gb:AK065542.1
DB_XREF= gi:32975560
TID=Os.7440.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7440 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013033A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013033A01, full insert sequence.
FL= gb:AK065542.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0175011/11pseudouridylate synthase TruB family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01700Os.26934.1.S1_at10/115+399242..409655peroxisomal ABC transporter PXA1, putative, expressed
LOC_Os05g01700Os.46404.1.S1_x_at1/115+399242..409655peroxisomal ABC transporter PXA1, putative, expressed
LOC_Os05g01710Os.12011.1.S1_at10/115+415052..421312Transcription initiation factor IIA gamma chain, putative, expressed
LOC_Os05g01730Os.12212.1.S1_at11/115+424405..426820Drought induced 19 protein containing protein, expressed
LOC_Os05g01750Os.7440.1.S1_at11/115+426846..431252pseudouridylate synthase TruB family protein, putative, expressed
LOC_Os05g01760Os.20884.1.S1_at11/115+432034..436298expressed protein
LOC_Os05g01770OsAffx.31552.3.S1_x_at5/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.31552.2.S1_at2/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.29148.1.S1_at1/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.11270.1.S1_at1/115+443126..446643hypothetical protein
LOC_Os05g01780Os.38894.1.S1_s_at11/115+449442..454325ZIK1 protein, putative, expressed
LOC_Os05g01780Os.49298.1.S1_at11/115+449442..454325ZIK1 protein, putative, expressed
LOC_Os05g01790Os.50154.1.S1_s_at11/115+456051..457172expressed protein
LOC_Os05g01790Os.50154.1.S1_at10/115+456051..457172expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009451biological_processRNA modification
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7440.1.S1_at--533--8171Chr05:428067..428091 (25 bp)
GGAACATATATTCGATCCCTCTGTG
LOC_Os05g01750
Os.7440.1.S1_at--1124--8171Chr05:427507..427528 (22 bp)
GGAAGCTGTGCTCATTTAACTGCCT
LOC_Os05g01750
Os.7440.1.S1_at--831--10331Chr05:427493..427517 (25 bp)
TTTAACTGCCTTGCGGAGAGACTCA
LOC_Os05g01750
Os.7440.1.S1_at--705--6011Chr05:427299..427502 (25 bp)
GAGAGACTCAATTGGCGACTTTTCA
LOC_Os05g01750
Os.7440.1.S1_at--754--5691Chr05:427283..427307 (25 bp)
GACTTTTCAGTCAATGATGCTTGGA
LOC_Os05g01750
Os.7440.1.S1_at--970--5071Chr05:427187..427211 (25 bp)
GCAGCCATCGTTGGGTTCAGTTTGA
LOC_Os05g01750
Os.7440.1.S1_at--1070--6851Chr05:427168..427192 (25 bp)
GTTTGAGTTTCAGCGCTTAGCGAAC
LOC_Os05g01750
Os.7440.1.S1_at--330--3171Chr05:427143..427167 (25 bp)
AATTGCTTTCTTCCAATCTTCCCTG
LOC_Os05g01750
Os.7440.1.S1_at--153--10291Chr05:427125..427149 (25 bp)
TTCCCTGGTAGGCAATTGGTCGTTG
LOC_Os05g01750
Os.7440.1.S1_at--326--3451Chr05:427077..427101 (25 bp)
CAGTAACGCTCAACCCAGAGATCAG
LOC_Os05g01750
Os.7440.1.S1_at--127--4971Chr05:426959..426983 (25 bp)
GCATACCTGATGTAGCATGCATCCT
LOC_Os05g01750
Target Sequence 
GGAACATATATTCGATCCCTCTGTGCAGATTTGGGGAAAGCNCTCGGAAGCTGTGCTCATTTAACTGCCTTGCGGAGAGA
CTCAATTGGCGACTTTTCAGTCAATGATGCTTGGAGTTTTGCTGAGCTGGAGGAACAAATCACAAAGGGATATTTATGAT
TACTCACCATGCCATTTGGCAAAATTGCAGCCATCGTTGGGTTCAGTTTGAGTTTCAGCGCTTAGCGAACAATTGCTTTC
TTCCAATCTTCCCTGGTAGGCAATTGGTCGTTGAGTACTGAGAAGCTATTAACCANCAGTAACGCTCAACCCAGAGATCA
GCACTTAATCTGACGTTTCAGACCTTGGGGGAAAGGAATTCATTCTGGTGTCCCTGGACACNTACGGATGTAGCAGCTTT
ATATATTGCAATGATGCATACCTGATGTAGCATGCATCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7440.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis