Browse Element(s) Details


Os.50154.1.S1_at

Description gb:AK119954.1
DB_XREF= gi:37989577
TID=Os.50154.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50154 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-184-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-C08, full insert sequence.
FL= gb:AK119954.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0179010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01750Os.7440.1.S1_at11/115+426846..431252pseudouridylate synthase TruB family protein, putative, expressed
LOC_Os05g01760Os.20884.1.S1_at11/115+432034..436298expressed protein
LOC_Os05g01770OsAffx.31552.3.S1_x_at5/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.31552.2.S1_at2/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.29148.1.S1_at1/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.11270.1.S1_at1/115+443126..446643hypothetical protein
LOC_Os05g01780Os.38894.1.S1_s_at11/115+449442..454325ZIK1 protein, putative, expressed
LOC_Os05g01780Os.49298.1.S1_at11/115+449442..454325ZIK1 protein, putative, expressed
LOC_Os05g01790Os.50154.1.S1_s_at11/115+456051..457172expressed protein
LOC_Os05g01790Os.50154.1.S1_at10/115+456051..457172expressed protein
LOC_Os05g01810Os.7098.1.S1_at11/115+464100..466404Vignain precursor, putative, expressed
LOC_Os05g01820Os.3430.1.S1_at11/115+470301..472374Cytochrome b5, putative, expressed
LOC_Os05g01830OsAffx.26681.1.S1_at11/115+474913..476128hypothetical protein
LOC_Os05g01840OsAffx.29799.2.S1_x_at10/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.2.S1_at10/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.1.S1_at6/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.1.S1_x_at5/115+477136..478482hypothetical protein
LOC_Os05g01850NANA5+479406..482265transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50154.1.S1_at--1088--7491Chr05:456574..456598 (25 bp)
GTGGTCGGCGACATGCGGAAGGACG
LOC_Os05g01790
Os.50154.1.S1_at--165--9371Chr05:457061..457085 (25 bp)
TCGACTGATCCATTATTGAGCTAGC
LOC_Os05g01790
Os.50154.1.S1_at--197--5731Chr05:457063..457087 (25 bp)
GACTGATCCATTATTGAGCTAGCTA
LOC_Os05g01790
Os.50154.1.S1_at--353--3871Chr05:457065..457089 (25 bp)
CTGATCCATTATTGAGCTAGCTAGC
LOC_Os05g01790
Os.50154.1.S1_at--11--4871Chr05:457080..457104 (25 bp)
GCTAGCTAGCTTCTTTCATTGGCGG
LOC_Os05g01790
Os.50154.1.S1_at--98--10011Chr05:457082..457106 (25 bp)
TAGCTAGCTTCTTTCATTGGCGGCT
LOC_Os05g01790
Os.50154.1.S1_at--860--4851Chr05:457084..457108 (25 bp)
GCTAGCTTCTTTCATTGGCGGCTGG
LOC_Os05g01790
Os.50154.1.S1_at--981--8312Chr05:457107..457131 (25 bp)
GGCTCTGATACCATGTTGATTAGAT
LOC_Os05g01790
Os.50154.1.S1_at--74--3871Chr05:457111..457135 (25 bp)
CTGATACCATGTTGATTAGATCGGG
LOC_Os05g01790
Os.50154.1.S1_at--667--7671NONE
GGGATTCCTGATCGAAACGAAAATG
NONE
Os.50154.1.S1_at--727--2371Chr05:457148..457172 (25 bp)
AAACGAAAATGCGAAGTTGTGAGCC
LOC_Os05g01790
Target Sequence 
GTGGTCGGCGACATGCGGAAGGACGCGCTCCGGCGCGCGTCGCCGCGCGCGGCGCCCGCGGCGTGCGACGCCGTCCCCGT
GGCGCGGCGGGAGCACGTGTTCGGGAAGCGGCGGTTCGCGGCCAAGGCGCGGTTCCACGACCAGGGCACCGTGCACGACA
TCGCGATCGAGTGCGGCGGCGGCGGCGAGGGCGGCGACGCGGACATGGAGATGACGATCGCGATCGACGGCGAGGAGGCG
GTGCAGGTGAAGCACCTGCAATGGAAGTTCAGAGGCAACCAGTCCGTCACCTTCAGCCGAGCAAAGGTGGAGATCTACTG
GGACGTCCATGACTGGCTCTTCAGCGCCGGCATGCGCCCCGCCCTCTTCATCTTCCGCCCCATTGTCCTCTCCAGCGCCT
CGGCGCCCGCCGCCGCCATGCTCCTCGACGGCTCGCCGCTGCCGCCGCCGGCCACCGGCTTCTGTCTCTACCTCTACGCC
TGGAAGCTCGACTGATCCATTATTGAGCTAGCTAGCTTCTTTCATTGGCGGCTGGCTCTGATACCATGTTGATTAGATCG
GGGATTCCTGATCGAAACGAAAATGCGAAGTTGTGAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis