Browse Element(s) Details


Os.7098.1.S1_at

Description gb:AK106508.1
DB_XREF= gi:32991717
TID=Os.7098.1
CNT=10
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.7098 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-G09, full insert sequence.
FL= gb:AY335487.1 gb:AK106508.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0181011/11Vignain precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01770OsAffx.31552.3.S1_x_at5/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.31552.2.S1_at2/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.29148.1.S1_at1/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.11270.1.S1_at1/115+443126..446643hypothetical protein
LOC_Os05g01780Os.38894.1.S1_s_at11/115+449442..454325ZIK1 protein, putative, expressed
LOC_Os05g01780Os.49298.1.S1_at11/115+449442..454325ZIK1 protein, putative, expressed
LOC_Os05g01790Os.50154.1.S1_s_at11/115+456051..457172expressed protein
LOC_Os05g01790Os.50154.1.S1_at10/115+456051..457172expressed protein
LOC_Os05g01810Os.7098.1.S1_at11/115+464100..466404Vignain precursor, putative, expressed
LOC_Os05g01820Os.3430.1.S1_at11/115+470301..472374Cytochrome b5, putative, expressed
LOC_Os05g01830OsAffx.26681.1.S1_at11/115+474913..476128hypothetical protein
LOC_Os05g01840OsAffx.29799.2.S1_x_at10/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.2.S1_at10/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.1.S1_at6/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.1.S1_x_at5/115+477136..478482hypothetical protein
LOC_Os05g01850NANA5+479406..482265transposon protein, putative, Mutator sub-class
LOC_Os05g01860OsAffx.4227.1.S1_at11/115+483690..484081hypothetical protein
LOC_Os05g01870NANA5+485034..485393hypothetical protein
LOC_Os05g01880NANA5+486781..487428hypothetical protein
LOC_Os05g01890OsAffx.26683.1.S1_x_at10/115+487822..488308hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009414biological_processresponse to water deprivation
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0008233molecular_functionpeptidase activity
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7098.1.S1_at--1000--2931Chr05:464962..464986 (25 bp)
AAGGCGTTGGCGCATCAGCCTGTCA
LOC_Os05g01810
Os.7098.1.S1_at--599--8731Chr05:464982..465006 (25 bp)
TGTCAGCGTCGCCATTGAAGCATCC
LOC_Os05g01810
Os.7098.1.S1_at--696--8991Chr05:464997..465021 (25 bp)
TGAAGCATCCGGTCGCCACTTCCAG
LOC_Os05g01810
Os.7098.1.S1_at--538--5731Chr05:465968..465992 (25 bp)
GACGGCCGTTGGATATGGTACAAGC
LOC_Os05g01810
Os.7098.1.S1_at--790--3231Chr05:465988..466012 (25 bp)
CAAGCAAGGGCCAAGATTACATCAT
LOC_Os05g01810
Os.7098.1.S1_at--948--3211Chr05:466079..466103 (25 bp)
CAAGGGTGAAGGTCTATGTGGCATC
LOC_Os05g01810
Os.7098.1.S1_at--584--6252Chr05:466192..466216 (25 bp)
GATGGTCCTTCAAAGTTTCTCTCTT
LOC_Os05g01810
Os.7098.1.S1_at--1024--3632Chr05:466214..466238 (25 bp)
CTTCTCCTCTTGTTTTATTAGCCTT
LOC_Os05g01810
Os.7098.1.S1_at--1144--1571Chr05:466321..466345 (25 bp)
AGCTGTTTGTTTGTATTCGATTTTC
LOC_Os05g01810
Os.7098.1.S1_at--163--10231Chr05:466334..466358 (25 bp)
TATTCGATTTTCTTTTGCGCGCTTT
LOC_Os05g01810
Os.7098.1.S1_at--133--9171Chr05:466349..466373 (25 bp)
TGCGCGCTTTGAAATCATCGATGAA
LOC_Os05g01810
Target Sequence 
AAGGCGTTGGCGCATCAGCCTGTCAGCGTCGCCATTGAAGCATCCGGTCGCCACTTCCAGTTCTACAGCGGGGGTGTGTT
TGATGGTCCATGCGGTGAGCANACTGGATCACNGGTGTGACGGCCGTTGGATATGGTACAAGCAAGGGCCAAGATTACAT
CATCGTGAAGAACTCATGGGGCCCACATTGGGGCGAGAAGGGGTACATCCGCATGAAGAGGGGCACTGGCAAGGGTGAAG
GTCTATGTGGCATCAACAAGATGGCCTCTTACCCCACCAAGGACAACTAAACTCCTACTACTAAATAACTCAATTGAATC
AACACATGAGGATCATACATATGATGGTCCTTCAAAGTTTCTCTCTTCTCCTCTTGTTTTATTAGCCTTTAATTCCNCTG
TTTTTTCTTCTTTCCAAAGATTTGGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCACAAGCTGTTTG
TTTGTATTCGATTTTCTTTTGCGCGCTTTGAAATCATCGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis