Browse Element(s) Details


OsAffx.29799.1.S1_at

Description tigr:9637.m00838
TID=OsAffx.29799.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g111307/11hypothetical protein
LOC_Os05g018406/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11060Os.47463.1.S1_x_at3/119+6138209..6141906transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g11060Os.14491.2.S1_x_at2/119+6138209..6141906transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g11070NANA9+6144539..6147870transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g11080NANA9+6148900..6149765retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g11090NANA9+6151732..6152127hypothetical protein
LOC_Os09g11100NANA9+6153314..6159137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g11110OsAffx.20354.1.S1_at2/119+6159766..6162707retrotransposon protein, putative, unclassified
LOC_Os09g11120NANA9+6164470..6165262hypothetical protein
LOC_Os09g11130OsAffx.29799.1.S1_x_at9/119+6166523..6167856hypothetical protein
LOC_Os09g11130OsAffx.29799.1.S1_at7/119+6166523..6167856hypothetical protein
LOC_Os09g11130OsAffx.29799.2.S1_at2/119+6166523..6167856hypothetical protein
LOC_Os09g11130OsAffx.29799.2.S1_x_at1/119+6166523..6167856hypothetical protein
LOC_Os09g11140OsAffx.25834.1.S1_at1/119+6170119..6173633hypothetical protein
LOC_Os09g11150OsAffx.11392.5.S1_at11/119+6175333..6178600hypothetical protein
LOC_Os09g11150OsAffx.11392.2.S1_x_at3/119+6175333..6178600hypothetical protein
LOC_Os09g11160OsAffx.29800.1.S1_at11/119+6183856..6185368expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29799.1.S1_at--298--10451Chr05:477205..477362 (25 bp)
TTAGTGATTCCCGACAATGTGCCAA
LOC_Os05g01840
OsAffx.29799.1.S1_at--615--10071Chr05:477206..477363 (25 bp)
TAGTGATTCCCGACAATGTGCCAAT
LOC_Os05g01840
OsAffx.29799.1.S1_at--161--1112Chr09:6166594..6166751 (25 bp)
AGTGATTCCCGACAATGTGCCAATC
LOC_Os09g11130
OsAffx.29799.1.S1_at--49--6331NONE
GATGCAAGGTGGGTTAAGTGCCATT
NONE
OsAffx.29799.1.S1_at--47--9011NONE
TGCAAGGTGGGTTAAGTGCCATTTT
NONE
OsAffx.29799.1.S1_at--1095--3192Chr09:6167316..6167336 (21 bp)
CAAGGTGGGTTAAGTGCCATTTTGT
LOC_Os09g11130
OsAffx.29799.1.S1_at--486--8632Chr09:6167317..6167341 (25 bp)
TGGGTTAAGTGCCATTTTGTTAAAT
LOC_Os09g11130
OsAffx.29799.1.S1_at--76--3592Chr09:6167329..6167353 (25 bp)
CATTTTGTTAAATGGGTGGATCCTG
LOC_Os09g11130
OsAffx.29799.1.S1_at--815--6371Chr09:6167347..6167371 (25 bp)
GATCCTGAATGGGATGAGCTGGCCG
LOC_Os09g11130
OsAffx.29799.1.S1_at--1013--2791Chr09:6167464..6167488 (25 bp)
AAGATGCGCGAGGATGACCTCTGGA
LOC_Os09g11130
OsAffx.29799.1.S1_at--1098--591Chr09:6167467..6167491 (25 bp)
ATGCGCGAGGATGACCTCTGGAGCC
LOC_Os09g11130
Target Sequence 
TTAGTGATTCCCGACAATGTGCCAATCGATTCTATGATTAAGAAGATGCAGGATGCAAGGTGGGTTAAGTGCCATTTTGT
TAAATGGGTGGATCCTGAATGGGATGAGCTGGCCGCAAAAACAATTTTATATCTTAGTGAGAGAAACATTGTGCTTCAGA
AGTCGCTCGATGATGTGAACAAAAGTTGGATGTCTTTGTACGCGAGGAAGATGCGCGAGGATGACCTCTGGAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29799.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis