Browse Element(s) Details


Os.50154.1.S1_s_at

Description gb:AK119954.1
DB_XREF= gi:37989577
TID=Os.50154.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50154 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-184-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-C08, full insert sequence.
FL= gb:AK119954.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0179011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01750Os.7440.1.S1_at11/115+426846..431252pseudouridylate synthase TruB family protein, putative, expressed
LOC_Os05g01760Os.20884.1.S1_at11/115+432034..436298expressed protein
LOC_Os05g01770OsAffx.31552.3.S1_x_at5/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.31552.2.S1_at2/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.29148.1.S1_at1/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.11270.1.S1_at1/115+443126..446643hypothetical protein
LOC_Os05g01780Os.38894.1.S1_s_at11/115+449442..454325ZIK1 protein, putative, expressed
LOC_Os05g01780Os.49298.1.S1_at11/115+449442..454325ZIK1 protein, putative, expressed
LOC_Os05g01790Os.50154.1.S1_s_at11/115+456051..457172expressed protein
LOC_Os05g01790Os.50154.1.S1_at10/115+456051..457172expressed protein
LOC_Os05g01810Os.7098.1.S1_at11/115+464100..466404Vignain precursor, putative, expressed
LOC_Os05g01820Os.3430.1.S1_at11/115+470301..472374Cytochrome b5, putative, expressed
LOC_Os05g01830OsAffx.26681.1.S1_at11/115+474913..476128hypothetical protein
LOC_Os05g01840OsAffx.29799.2.S1_x_at10/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.2.S1_at10/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.1.S1_at6/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.1.S1_x_at5/115+477136..478482hypothetical protein
LOC_Os05g01850NANA5+479406..482265transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50154.1.S1_s_at--633--891Chr05:456698..456722 (25 bp)
AGGCGCGGTTCCACGACCAGGGCAC
LOC_Os05g01790
Os.50154.1.S1_s_at--1141--1071Chr05:456716..456740 (25 bp)
AGGGCACCGTGCACGACATCGCGAT
LOC_Os05g01790
Os.50154.1.S1_s_at--1101--5091Chr05:456726..456750 (25 bp)
GCACGACATCGCGATCGAGTGCGGC
LOC_Os05g01790
Os.50154.1.S1_s_at--786--7751Chr05:456819..456843 (25 bp)
GGTGAAGCACCTGCAATGGAAGTTC
LOC_Os05g01790
Os.50154.1.S1_s_at--339--5331Chr05:456837..456861 (25 bp)
GAAGTTCAGAGGCAACCAGTCCGTC
LOC_Os05g01790
Os.50154.1.S1_s_at--916--6191Chr05:456845..456869 (25 bp)
GAGGCAACCAGTCCGTCACCTTCAG
LOC_Os05g01790
Os.50154.1.S1_s_at--686--1671Chr05:456868..456892 (25 bp)
AGCCGAGCAAAGGTGGAGATCTACT
LOC_Os05g01790
Os.50154.1.S1_s_at--29--6051Chr05:456883..456907 (25 bp)
GAGATCTACTGGGACGTCCATGACT
LOC_Os05g01790
Os.50154.1.S1_s_at--1110--9911Chr05:456889..456913 (25 bp)
TACTGGGACGTCCATGACTGGCTCT
LOC_Os05g01790
Os.50154.1.S1_s_at--197--691Chr05:456902..456926 (25 bp)
ATGACTGGCTCTTCAGCGCCGGCAT
LOC_Os05g01790
Os.50154.1.S1_s_at--600--9951Chr05:457042..457066 (25 bp)
TACCTCTACGCCTGGAAGCTCGACT
LOC_Os05g01790
Target Sequence 
AGGCGCGGTTCCACGACCAGGGCACCGTGCACGACATCGCGATCGAGTGCGGCGGCGGCGGCGAGGGCGGCGACGCGGAC
ATGGAGATGACGATCGCGATCGACGGCGAGGAGGCGGTGCAGGTGAAGCACCTGCAATGGAAGTTCAGAGGCAACCAGTC
CGTCACCTTCAGCCGAGCAAAGGTGGAGATCTACTGGGACGTCCATGACTGGCTCTTCAGCGCCGGCATGCGCCCCGCCC
TCTTCATCTTCCGCCCCATTGTCCTCTCCAGCGCCTCGGCGCCCGCCGCCGCCATGCTCCTCGACGGCTCGCCGCTGCCG
CCGCCGGCCACCGGCTTCTGTCTCTACCTCTACGCCTGGAAGCTCGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50154.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis