Browse Element(s) Details


Os.3430.1.S1_at

Description gb:AK064821.1
DB_XREF= gi:32974839
TID=Os.3430.1
CNT=80
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.3430 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for cytochrome b5
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000E24, full insert sequence.
FL= gb:AK064821.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0182011/11Cytochrome b5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01770OsAffx.31552.3.S1_x_at5/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.31552.2.S1_at2/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.29148.1.S1_at1/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.11270.1.S1_at1/115+443126..446643hypothetical protein
LOC_Os05g01780Os.38894.1.S1_s_at11/115+449442..454325ZIK1 protein, putative, expressed
LOC_Os05g01780Os.49298.1.S1_at11/115+449442..454325ZIK1 protein, putative, expressed
LOC_Os05g01790Os.50154.1.S1_s_at11/115+456051..457172expressed protein
LOC_Os05g01790Os.50154.1.S1_at10/115+456051..457172expressed protein
LOC_Os05g01810Os.7098.1.S1_at11/115+464100..466404Vignain precursor, putative, expressed
LOC_Os05g01820Os.3430.1.S1_at11/115+470301..472374Cytochrome b5, putative, expressed
LOC_Os05g01830OsAffx.26681.1.S1_at11/115+474913..476128hypothetical protein
LOC_Os05g01840OsAffx.29799.2.S1_x_at10/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.2.S1_at10/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.1.S1_at6/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.1.S1_x_at5/115+477136..478482hypothetical protein
LOC_Os05g01850NANA5+479406..482265transposon protein, putative, Mutator sub-class
LOC_Os05g01860OsAffx.4227.1.S1_at11/115+483690..484081hypothetical protein
LOC_Os05g01870NANA5+485034..485393hypothetical protein
LOC_Os05g01880NANA5+486781..487428hypothetical protein
LOC_Os05g01890OsAffx.26683.1.S1_x_at10/115+487822..488308hypothetical protein
LOC_Os05g01900OsAffx.6161.1.S1_x_at11/115+492152..494080hypothetical protein
LOC_Os05g01900OsAffx.6161.1.S1_s_at11/115+492152..494080hypothetical protein
LOC_Os05g01910OsAffx.26684.1.S1_at10/115+494994..500963BPM, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005489molecular_functionelectron transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3430.1.S1_at--121--771Chr05:471655..471676 (22 bp)
ATGTCTTGCTATCTTCAACTGGCAA
LOC_Os05g01820
Os.3430.1.S1_at--933--2551Chr05:471794..471814 (21 bp)
AACTGGCAAGGACGCGACTGACGAT
LOC_Os05g01820
Os.3430.1.S1_at--1041--5791Chr05:471800..471824 (25 bp)
GACGCGACTGACGATTTTGAGGATG
LOC_Os05g01820
Os.3430.1.S1_at--312--171Chr05:471813..471837 (25 bp)
ATTTTGAGGATGTCGGGCACAGCAC
LOC_Os05g01820
Os.3430.1.S1_at--1009--591Chr05:471858..471882 (25 bp)
ATGAGTATTACGTTGGCGACATCGA
LOC_Os05g01820
Os.3430.1.S1_at--34--3111Chr05:471891..471915 (25 bp)
CAATACCCGCGAGGACGAAGTACGT
LOC_Os05g01820
Os.3430.1.S1_at--897--4431Chr05:471995..472019 (25 bp)
GCCATATTGGGCCTGGCTGTTGCAA
LOC_Os05g01820
Os.3430.1.S1_at--343--8811Chr05:472012..472036 (25 bp)
TGTTGCAATTAGGATCTACACCAAG
LOC_Os05g01820
Os.3430.1.S1_at--1113--9431Chr05:472037..472061 (25 bp)
TCGGAGTCCGCTTAGTGCTGTTCTC
LOC_Os05g01820
Os.3430.1.S1_at--937--4891Chr05:472046..472070 (25 bp)
GCTTAGTGCTGTTCTCTTAGTGTTA
LOC_Os05g01820
Os.3430.1.S1_at--559--8871Chr05:472246..472270 (25 bp)
TGATGGATCTGCTCATTGTTATTAA
LOC_Os05g01820
Target Sequence 
ATGTCTTGCTATCTTCAACTGGCAAGGACGCGACTGACGATTTTGAGGATGTCGGGCACAGCACGACTGCTCGTGCGATG
ATGGATGAGTATTACGTTGGCGACATCGACACATCCACAATACCCGCGAGGACGAAGTACGTTCCCCCAAAGCAACCACA
CTACAACCAGGACAAGACCCCGGAGTTCATCATCAAGATCCTCCAGTTCTTGGTTCCCCTCGCCATATTGGGCCTGGCTG
TTGCAATTAGGATCTACACCAAGTCGGAGTCCGCTTAGTGCTGTTCTCTTAGTGTTATAAGAGTGGAAGGTACCGAATAA
GTTAGCAAGAGTTTTGTGTGATTCATACCAGTGTAACATGTCATGAATTCGTCGAATGTTCTGAAGATGCTGTGGGTTTT
GTGGTCCTGGGATGTCCACTTCGGTAAAGATCGATAAGATTCAAAGTACTCGTTAATCGTTATACATTCTGATGATGGAT
CTGCTCATTGTTATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3430.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis