Browse Element(s) Details


OsAffx.26684.1.S1_at

Description tigr:9633.m00104
TID=OsAffx.26684.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=pumilioMpt5 family RNA-binding protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0191010/11BPM, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01820Os.3430.1.S1_at11/115+470301..472374Cytochrome b5, putative, expressed
LOC_Os05g01830OsAffx.26681.1.S1_at11/115+474913..476128hypothetical protein
LOC_Os05g01840OsAffx.29799.2.S1_x_at10/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.2.S1_at10/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.1.S1_at6/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.1.S1_x_at5/115+477136..478482hypothetical protein
LOC_Os05g01850NANA5+479406..482265transposon protein, putative, Mutator sub-class
LOC_Os05g01860OsAffx.4227.1.S1_at11/115+483690..484081hypothetical protein
LOC_Os05g01870NANA5+485034..485393hypothetical protein
LOC_Os05g01880NANA5+486781..487428hypothetical protein
LOC_Os05g01890OsAffx.26683.1.S1_x_at10/115+487822..488308hypothetical protein
LOC_Os05g01900OsAffx.6161.1.S1_x_at11/115+492152..494080hypothetical protein
LOC_Os05g01900OsAffx.6161.1.S1_s_at11/115+492152..494080hypothetical protein
LOC_Os05g01910OsAffx.26684.1.S1_at10/115+494994..500963BPM, putative, expressed
LOC_Os05g01920NANA5+506831..507046Subtilisin-chymotrypsin inhibitor CI-1B, putative
LOC_Os05g01930OsAffx.30633.1.S1_at1/115+507554..509173hypothetical protein
LOC_Os05g01940Os.6261.1.S1_at10/115+515991..517710Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g01940OsAffx.18117.1.S1_x_at2/115+515991..517710Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g01950Os.50420.1.S1_s_at11/115+520220..521013expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26684.1.S1_at--486--8871Chr05:496945..496969 (25 bp)
TGATGATCCTACAACACAGCAAATA
LOC_Os05g01910
OsAffx.26684.1.S1_at--738--7991Chr05:496915..496939 (25 bp)
GGATGAGATTCTCCAGTCCGTTTGC
LOC_Os05g01910
OsAffx.26684.1.S1_at--228--1151Chr05:496901..496925 (25 bp)
AGTCCGTTTGCTTGCTGGCTCAAGA
LOC_Os05g01910
OsAffx.26684.1.S1_at--116--8491Chr05:496886..496910 (25 bp)
TGGCTCAAGATCAATACGGCAACTA
LOC_Os05g01910
OsAffx.26684.1.S1_at--626--8231NONE
GGCAACTACGTTGTTCAGCATGTAC
NONE
OsAffx.26684.1.S1_at--709--8731Chr05:496213..496237 (25 bp)
TGTACTGGAGCACGGAAAACCACAT
LOC_Os05g01910
OsAffx.26684.1.S1_at--761--3011Chr05:496057..496081 (25 bp)
AATGCTTGGATCCACTAATGAGAGT
LOC_Os05g01910
OsAffx.26684.1.S1_at--610--3431Chr05:495821..495845 (25 bp)
CAGAGGGAGGCGATCCTTACAAGGA
LOC_Os05g01910
OsAffx.26684.1.S1_at--856--1491Chr05:495792..495816 (25 bp)
AGCACATCTGAACACGCTGAAGAAG
LOC_Os05g01910
OsAffx.26684.1.S1_at--857--1491Chr05:495754..495778 (25 bp)
AGCACATAGTAGCACGCGTAGAGAA
LOC_Os05g01910
OsAffx.26684.1.S1_at--421--1831Chr05:495741..495765 (25 bp)
ACGCGTAGAGAAGCTTGTTGCTGCT
LOC_Os05g01910
Target Sequence 
TGATGATCCTACAACACAGCAAATAATGATGGATGAGATTCTCCAGTCCGTTTGCTTGCTGGCTCAAGATCAATACGGCA
ACTACGTTGTTCAGCATGTACTGGAGCACGGAAAACCACATGAGAGATCTGCTATTATCGAGAAGTTAATTGGACAAATA
GTTCAAATGAGCCAGCAAAAGTTTGCCTCAAATGTCATTGAGAAGTGCTTAGCCTTTGGGAATCCTGTAGAACGACAGAT
TTTGATCAGTGAAATGCTTGGATCCACTAATGAGAGTGAACACCTTGAGGTAATGATGAAAGATCAGTTTGCAAACTATG
TGGTGCAGAAGGTGCTAGAGACTTGTGATGATCAGCAGAGGGAGGCGATCCTTACAAGGATAAAAGCACATCTGAACACG
CTGAAGAAGTATACCTATGGGAAGCACATAGTAGCACGCGTAGAGAAGCTTGTTGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis