Browse Element(s) Details


Os.49298.1.S1_at

Description gb:AK070061.1
DB_XREF= gi:32980085
TID=Os.49298.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49298 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023042N03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042N03, full insert sequence.
FL= gb:AK070061.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0178011/11ZIK1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01730Os.12212.1.S1_at11/115+424405..426820Drought induced 19 protein containing protein, expressed
LOC_Os05g01750Os.7440.1.S1_at11/115+426846..431252pseudouridylate synthase TruB family protein, putative, expressed
LOC_Os05g01760Os.20884.1.S1_at11/115+432034..436298expressed protein
LOC_Os05g01770OsAffx.31552.3.S1_x_at5/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.31552.2.S1_at2/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.29148.1.S1_at1/115+443126..446643hypothetical protein
LOC_Os05g01770OsAffx.11270.1.S1_at1/115+443126..446643hypothetical protein
LOC_Os05g01780Os.38894.1.S1_s_at11/115+449442..454325ZIK1 protein, putative, expressed
LOC_Os05g01780Os.49298.1.S1_at11/115+449442..454325ZIK1 protein, putative, expressed
LOC_Os05g01790Os.50154.1.S1_s_at11/115+456051..457172expressed protein
LOC_Os05g01790Os.50154.1.S1_at10/115+456051..457172expressed protein
LOC_Os05g01810Os.7098.1.S1_at11/115+464100..466404Vignain precursor, putative, expressed
LOC_Os05g01820Os.3430.1.S1_at11/115+470301..472374Cytochrome b5, putative, expressed
LOC_Os05g01830OsAffx.26681.1.S1_at11/115+474913..476128hypothetical protein
LOC_Os05g01840OsAffx.29799.2.S1_x_at10/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.2.S1_at10/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.1.S1_at6/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.1.S1_x_at5/115+477136..478482hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007623biological_processcircadian rhythm
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49298.1.S1_at--1027--3211Chr05:454000..454024 (25 bp)
CAAGTGTTTGTGGAATCTGTGACCA
LOC_Os05g01780
Os.49298.1.S1_at--891--5251Chr05:454012..454036 (25 bp)
GAATCTGTGACCAAGCGGTGCAATA
LOC_Os05g01780
Os.49298.1.S1_at--929--1611Chr05:454025..454049 (25 bp)
AGCGGTGCAATACATATACGATACT
LOC_Os05g01780
Os.49298.1.S1_at--57--6491Chr05:454044..454068 (25 bp)
GATACTGATGTAGCTGTCTGGATTT
LOC_Os05g01780
Os.49298.1.S1_at--436--2891Chr05:454104..454128 (25 bp)
AAGGTTTCTGCTCACCAAACAAAAT
LOC_Os05g01780
Os.49298.1.S1_at--21--1751Chr05:454137..454161 (25 bp)
ACCATTGTGTTACTGTATTCCTGAA
LOC_Os05g01780
Os.49298.1.S1_at--387--1971Chr05:454148..454172 (25 bp)
ACTGTATTCCTGAATTGTTCATGAG
LOC_Os05g01780
Os.49298.1.S1_at--759--10531Chr05:454165..454189 (25 bp)
TTCATGAGAAGTGCACCTCCTTGTT
LOC_Os05g01780
Os.49298.1.S1_at--180--1471Chr05:454171..454195 (25 bp)
AGAAGTGCACCTCCTTGTTTTTCTC
LOC_Os05g01780
Os.49298.1.S1_at--826--331Chr05:454258..454282 (25 bp)
ATACATCAGTGTTTGAGCTGTTTCA
LOC_Os05g01780
Os.49298.1.S1_at--711--5891Chr05:454272..454296 (25 bp)
GAGCTGTTTCATACTACTACTTGCA
LOC_Os05g01780
Target Sequence 
CAAGTGTTTGTGGAATCTGTGACCAAGCGGTGCAATACATATACGATACTGATGTAGCTGTCTGGATTTTTGTTTTTGTT
TTTTGTTTCTTGAAGGCAAGACAAAAGGTTTCTGCTCACCAAACAAAATCTGCAGATACCATTGTGTTACTGTATTCCTG
AATTGTTCATGAGAAGTGCACCTCCTTGTTTTTCTCCCTCTCTTTTTTTCCTTGTAATTTGATGATTTTTGGAACTAAGA
ATTAATGTTAATGATGTAATACATCAGTGTTTGAGCTGTTTCATACTACTACTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49298.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis