Browse Element(s) Details


Os.26934.1.S1_at

Description gb:AK099809.1
DB_XREF= gi:32985018
TID=Os.26934.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26934 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013099A18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013099A18, full insert sequence.
FL= gb:AK120821.1 gb:AK099809.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0170010/11peroxisomal ABC transporter PXA1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01660NANA5+371919..374565retrotransposon protein, putative, unclassified
LOC_Os05g01670NANA5+375190..381345retrotransposon protein, putative, unclassified
LOC_Os05g01680NANA5+387510..388502transposon protein, putative, unclassified, expressed
LOC_Os05g01690Os.16880.1.S1_at11/115+389137..397564expressed protein
LOC_Os05g01700Os.26934.1.S1_at10/115+399242..409655peroxisomal ABC transporter PXA1, putative, expressed
LOC_Os05g01700Os.46404.1.S1_x_at1/115+399242..409655peroxisomal ABC transporter PXA1, putative, expressed
LOC_Os05g01710Os.12011.1.S1_at10/115+415052..421312Transcription initiation factor IIA gamma chain, putative, expressed
LOC_Os05g01730Os.12212.1.S1_at11/115+424405..426820Drought induced 19 protein containing protein, expressed
LOC_Os05g01750Os.7440.1.S1_at11/115+426846..431252pseudouridylate synthase TruB family protein, putative, expressed
LOC_Os05g01760Os.20884.1.S1_at11/115+432034..436298expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006635biological_processfatty acid beta-oxidation
GO:0015916biological_processfatty acyl coenzyme A transport
GO:0005777cellular_componentperoxisome
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26934.1.S1_at--886--9591Chr05:399780..399804 (25 bp)
TCATCGACGGAGAAGGAAACTGGGA
LOC_Os05g01700
Os.26934.1.S1_at--69--8751Chr05:399640..399664 (25 bp)
TGTACAATTGCAAAGCAGCTGTTGT
LOC_Os05g01700
Os.26934.1.S1_at--781--5131Chr05:399631..399655 (25 bp)
GCAAAGCAGCTGTTGTGAGTGAAAA
LOC_Os05g01700
Os.26934.1.S1_at--310--2311Chr05:399609..399633 (25 bp)
AAAGTACAGGTTTTCAGTCTCATTG
LOC_Os05g01700
Os.26934.1.S1_at--1081--2111Chr05:399536..399560 (25 bp)
ACATGGCATTTGTAGTTTAGTTCAT
LOC_Os05g01700
Os.26934.1.S1_at--575--1211Chr05:399523..399547 (25 bp)
AGTTTAGTTCATACGGAGGTAGGTG
LOC_Os05g01700
Os.26934.1.S1_at--112--5991Chr05:399474..399498 (25 bp)
GAGAGATGTGGTATTTGTTTTTAAG
LOC_Os05g01700
Os.26934.1.S1_at--709--10611Chr05:399411..399435 (25 bp)
TTCCGGCATTGTTAATATTAATTCG
LOC_Os05g01700
Os.26934.1.S1_at--888--3991Chr05:399388..399412 (25 bp)
CGATAAGTAATAATGTGGCTTCCTT
LOC_Os05g01700
Os.26934.1.S1_at--153--4191Chr05:399247..399271 (25 bp)
CCCTTCTTGCAACTGCGTTATCGAT
LOC_Os05g01700
Os.26934.1.S1_at--513--3631Chr05:399242..399266 (25 bp)
CTTGCAACTGCGTTATCGATTCTTC
NONE
Target Sequence 
TCATCGACGGAGAAGGAAACTGGGAGNTATGNGAGATCCNCCAATGATTTNTNTGACCGGTTCGCATTTNTNGGCATTNG
GNTTCCCAGTCCCAGCTGNTGNCCTGCTGNTGCTTGTTGATGTCAGGCTNTNTAGAAGTGNTGTACAATTGCAAAGCAGC
TGTTGTGAGTGAAAAGTACAGGTTTTCAGTCTCATTGTNTTTGAAGAAAGAAAAAANAAAGNCCTTGTNGACAATTTGGN
GTAGAACATGGCATTTGTAGTTTAGTTCATACGGAGGTAGGTGATGGGAGTTGCAGGGATGAGCATAGAGAGATGTGGTA
TTTGTTTTTAAGTAGATAATAAATGATAAGNTGATAGTNCAGTACAGNTNTTCCGGCATTGTTAATATTAATTCGATAAG
TAATAATGTGGCTTCCTTNTTGCTGCCATCAAGTTATGGCATATAATGTATGAAAATATTGCATGTAAATNCCTAGTGAT
TCTTGAATATTGGGTTTGAAGTTGTATCAGAGTATCAGACTGCTGCTTNTTGTCCCCTTCTTGCAACTGCGTTATCGATT
CTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26934.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis