Browse Element(s) Details


OsAffx.19759.1.S1_at

Description tigr:9640.m02017
TID=OsAffx.19759.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2036010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g20310Os.11084.1.S1_at11/1112+11860190..11863219expressed protein
LOC_Os12g20310Os.11084.2.S1_at10/1112+11860190..11863219expressed protein
LOC_Os12g20310Os.11084.2.S1_x_at6/1112+11860190..11863219expressed protein
LOC_Os12g20324OsAffx.31820.1.S1_x_at10/1112+11864243..11868967Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g20324Os.4195.1.S1_at9/1112+11864243..11868967Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g20324OsAffx.31820.1.S1_at4/1112+11864243..11868967Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g20340OsAffx.27737.1.S1_at2/1112+11873468..11876472retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20340OsAffx.30486.1.S1_at1/1112+11873468..11876472retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20350Os.45173.1.S1_x_at1/1112+11876779..11884028retrotransposon protein, putative, unclassified
LOC_Os12g20350OsAffx.20628.1.S1_at1/1112+11876779..11884028retrotransposon protein, putative, unclassified
LOC_Os12g20350Os.47130.4.A1_x_at1/1112+11876779..11884028retrotransposon protein, putative, unclassified
LOC_Os12g20360OsAffx.19759.1.S1_at10/1112+11886841..11887374hypothetical protein
LOC_Os12g20370OsAffx.31821.1.S1_at11/1112+11889952..11892524Zinc knuckle family protein
LOC_Os12g20380OsAffx.31822.1.S1_at10/1112+11898125..11899921hypothetical protein
LOC_Os12g20390Os.26897.1.S1_at11/1112+11902032..11904607expressed protein
LOC_Os12g20390OsAffx.29424.1.S1_at4/1112+11902032..11904607expressed protein
LOC_Os12g20400OsAffx.26327.1.S1_s_at11/1112+11907351..11910719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g20400Os.15412.1.S1_x_at8/1112+11907351..11910719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g20400OsAffx.26327.1.S1_at7/1112+11907351..11910719transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19759.1.S1_at--1091--6012Chr10:532616..532635 (20 bp)
GAGGGCTTACCACGGAGTGGCGGGA
NONE
OsAffx.19759.1.S1_at--692--1931Chr12:11887307..11887331 (25 bp)
ACGGAGTGGCGGGATGGCGAAGTTC
LOC_Os12g20360
OsAffx.19759.1.S1_at--28--871Chr12:11887294..11887318 (25 bp)
ATGGCGAAGTTCGATGGCGCGCGGC
LOC_Os12g20360
OsAffx.19759.1.S1_at--46--7371Chr12:11886899..11887259 (25 bp)
GTGACTGTCGCAGGTTTCGGTTCAA
LOC_Os12g20360
OsAffx.19759.1.S1_at--796--5711NONE
GACTGTCGCAGGTTTCGGTTCAATG
NONE
OsAffx.19759.1.S1_at--314--3871Chr12:11886895..11887255 (25 bp)
CTGTCGCAGGTTTCGGTTCAATGCA
LOC_Os12g20360
OsAffx.19759.1.S1_at--731--9351Chr12:11886892..11886913 (22 bp)
TCGCAGGTTTCGGTTCAATGCACTG
LOC_Os12g20360
OsAffx.19759.1.S1_at--761--1012Chr12:18692974..18692998 (25 bp)
AGGTTTCGGTTCAATGCACTGGCGC
NONE
OsAffx.19759.1.S1_at--1008--10292Chr12:18692971..18692995 (25 bp)
TTTCGGTTCAATGCACTGGCGCGGC
NONE
OsAffx.19759.1.S1_at--1002--9431Chr12:11886883..11886907 (25 bp)
TCGGTTCAATGCACTGGCGCGGCCT
LOC_Os12g20360
OsAffx.19759.1.S1_at--410--1951Chr12:11886871..11886895 (25 bp)
ACTGGCGCGGCCTGATTACCTATTC
LOC_Os12g20360
Target Sequence 
GAGGGCTTACCACGGAGTGGCGGGATGGCGAAGTTCGATGGCGCGCGGCGCGGTGTGGCCGAAACAGGGGCAGCCGGCGG
TTGGTGACTGTCGCAGGTTTCGGTTCAATGCACTGGCGCGGCCTGATTACCTATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19759.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis