Browse Element(s) Details


OsAffx.27737.1.S1_at

Description tigr:9634.m02010
TID=OsAffx.27737.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g203402/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g20290OsAffx.29030.1.S1_at1/1112+11847512..11849906retrotransposon protein, putative, unclassified
LOC_Os12g20300OsAffx.21171.3.S1_x_at2/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.21171.4.S1_x_at2/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.21171.5.S1_at1/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.20729.1.S1_x_at1/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.15212.1.S1_at1/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.2022.1.S1_at1/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.21171.5.S1_x_at1/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.21171.4.S1_at1/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.1674.1.S1_at1/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.21171.2.S1_at1/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20310Os.11084.1.S1_at11/1112+11860190..11863219expressed protein
LOC_Os12g20310Os.11084.2.S1_at10/1112+11860190..11863219expressed protein
LOC_Os12g20310Os.11084.2.S1_x_at6/1112+11860190..11863219expressed protein
LOC_Os12g20324OsAffx.31820.1.S1_x_at10/1112+11864243..11868967Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g20324Os.4195.1.S1_at9/1112+11864243..11868967Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g20324OsAffx.31820.1.S1_at4/1112+11864243..11868967Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g20340OsAffx.27737.1.S1_at2/1112+11873468..11876472retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20340OsAffx.30486.1.S1_at1/1112+11873468..11876472retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20350Os.45173.1.S1_x_at1/1112+11876779..11884028retrotransposon protein, putative, unclassified
LOC_Os12g20350OsAffx.20628.1.S1_at1/1112+11876779..11884028retrotransposon protein, putative, unclassified
LOC_Os12g20350Os.47130.4.A1_x_at1/1112+11876779..11884028retrotransposon protein, putative, unclassified
LOC_Os12g20360OsAffx.19759.1.S1_at10/1112+11886841..11887374hypothetical protein
LOC_Os12g20370OsAffx.31821.1.S1_at11/1112+11889952..11892524Zinc knuckle family protein
LOC_Os12g20380OsAffx.31822.1.S1_at10/1112+11898125..11899921hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27737.1.S1_at--908--10811Chr06:11861095..11861119 (25 bp)
TTGGTTCAACCAAAATTGTGTCAAT
NONE
OsAffx.27737.1.S1_at--618--7891Chr06:11861093..11861117 (25 bp)
GGTTCAACCAAAATTGTGTCAATCT
NONE
OsAffx.27737.1.S1_at--646--8671Chr06:11861079..11861103 (25 bp)
TGTGTCAATCTGAATCGCTTTATCA
NONE
OsAffx.27737.1.S1_at--417--7451Chr06:11861078..11861102 (25 bp)
GTGTCAATCTGAATCGCTTTATCAA
NONE
OsAffx.27737.1.S1_at--497--8731Chr06:11861077..11861101 (25 bp)
TGTCAATCTGAATCGCTTTATCAAT
NONE
OsAffx.27737.1.S1_at--1010--7071Chr06:11861076..11861100 (25 bp)
GTCAATCTGAATCGCTTTATCAATT
NONE
OsAffx.27737.1.S1_at--1086--3051Chr06:11861073..11861097 (25 bp)
AATCTGAATCGCTTTATCAATTCAT
NONE
OsAffx.27737.1.S1_at--932--5251NONE
GAATCGCTTTATCAATTCATATGAA
NONE
OsAffx.27737.1.S1_at--1140--4111Chr06:11860820..11861088 (25 bp)
CGCTTTATCAATTCATATGAAAGGG
NONE
OsAffx.27737.1.S1_at--632--6399Chr12:11873925..11873949 (25 bp)
GATCGAGTTCTGGAACAGAGCAAGA
LOC_Os12g20340
OsAffx.27737.1.S1_at--831--93710Chr12:11873927..11873951 (25 bp)
TCGAGTTCTGGAACAGAGCAAGAAT
LOC_Os12g20340
Target Sequence 
TTGGTTCAACCAAAATTGTGTCAATCTGAATCGCTTTATCAATTCATATGAAAGGGGATTTGGTCAAAGAAGAGTTGGAG
GCGGAGATCGAGTTCTGGAACAGAGCAAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27737.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis