Browse Element(s) Details


Os.11084.1.S1_at

Description gb:AK121569.1
DB_XREF= gi:37991192
TID=Os.11084.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11084 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033035E02, full insert sequence.
FL= gb:AK121569.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2031011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g20280OsAffx.27823.1.S1_at11/1112+11841154..11842696hypothetical protein
LOC_Os12g20280OsAffx.27823.2.S1_at6/1112+11841154..11842696hypothetical protein
LOC_Os12g20290OsAffx.29030.1.S1_at1/1112+11847512..11849906retrotransposon protein, putative, unclassified
LOC_Os12g20300OsAffx.21171.3.S1_x_at2/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.21171.4.S1_x_at2/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.21171.5.S1_at1/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.20729.1.S1_x_at1/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.15212.1.S1_at1/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.2022.1.S1_at1/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.21171.5.S1_x_at1/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.21171.4.S1_at1/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.1674.1.S1_at1/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.21171.2.S1_at1/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20310Os.11084.1.S1_at11/1112+11860190..11863219expressed protein
LOC_Os12g20310Os.11084.2.S1_at10/1112+11860190..11863219expressed protein
LOC_Os12g20310Os.11084.2.S1_x_at6/1112+11860190..11863219expressed protein
LOC_Os12g20324OsAffx.31820.1.S1_x_at10/1112+11864243..11868967Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g20324Os.4195.1.S1_at9/1112+11864243..11868967Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g20324OsAffx.31820.1.S1_at4/1112+11864243..11868967Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g20340OsAffx.27737.1.S1_at2/1112+11873468..11876472retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20340OsAffx.30486.1.S1_at1/1112+11873468..11876472retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20350Os.45173.1.S1_x_at1/1112+11876779..11884028retrotransposon protein, putative, unclassified
LOC_Os12g20350OsAffx.20628.1.S1_at1/1112+11876779..11884028retrotransposon protein, putative, unclassified
LOC_Os12g20350Os.47130.4.A1_x_at1/1112+11876779..11884028retrotransposon protein, putative, unclassified
LOC_Os12g20360OsAffx.19759.1.S1_at10/1112+11886841..11887374hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11084.1.S1_at--458--952Chr12:11862843..11862867 (25 bp)
AGGACTTCTAACTCGACATGTTGTA
LOC_Os12g20310
Os.11084.1.S1_at--567--3512Chr12:11862859..11862883 (25 bp)
CATGTTGTAGGCCTAGCTCAGTGAT
LOC_Os12g20310
Os.11084.1.S1_at--215--4832Chr12:11862874..11862898 (25 bp)
GCTCAGTGATGATTTAACCTTGCTA
LOC_Os12g20310
Os.11084.1.S1_at--1062--2632Chr12:11862889..11862913 (25 bp)
AACCTTGCTAGACTCATGCTTCGAA
LOC_Os12g20310
Os.11084.1.S1_at--978--631Chr12:11862904..11862928 (25 bp)
ATGCTTCGAATCATTCTTTCTGTAT
LOC_Os12g20310
Os.11084.1.S1_at--981--5112Chr12:11862968..11862992 (25 bp)
GCAAAGCCTTTTCCCCAGGGAGTAG
LOC_Os12g20310
Os.11084.1.S1_at--1108--8032Chr12:11862986..11863010 (25 bp)
GGAGTAGCCTTGCTCATCTAGTCAT
LOC_Os12g20310
Os.11084.1.S1_at--256--9551Chr12:11863002..11863026 (25 bp)
TCTAGTCATCTTATCGTCGGCATTT
LOC_Os12g20310
Os.11084.1.S1_at--1133--6592Chr12:11863074..11863098 (25 bp)
GATTGTCTCCCGTTTTGTAAAGCAG
LOC_Os12g20310
Os.11084.1.S1_at--1025--6452Chr12:11863119..11863143 (25 bp)
GATAATTTCTGTTAACTCTACTGTA
LOC_Os12g20310
Os.11084.1.S1_at--724--6672Chr12:11863150..11863174 (25 bp)
GTTGCTATAGATTCCAGACTCCAGT
LOC_Os12g20310
Target Sequence 
AGGACTTCTAACTCGACATGTTGTAGGCCTAGCTCAGTGATGATTTAACCTTGCTAGACTCATGCTTCGAATCATTCTTT
CTGTATTGTAATTTTTTTTTAATCTTGTGTTGCAATCCATGGCAAGCAAAGCCTTTTCCCCAGGGAGTAGCCTTGCTCAT
CTAGTCATCTTATCGTCGGCATTTGCCTGTGCTTGNATTTTCTTCCTTTTCAACCCACCCCGGCGTTGTCTGATTGTCTC
CCGTTTTGTAAAGCAGTAGCAAGTTAATTAGACGGTGATAATTTCTGTTAACTCTACTGTAAACAACGTTGCTATAGATT
CCAGACTCCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11084.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis