Browse Element(s) Details


OsAffx.15212.1.S1_at

Description tigr:9634.m00028
TID=OsAffx.15212.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to MOM
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0132011/11'chromo' domain containing protein, expressed
LOC_Os12g203001/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01260Os.47875.2.S1_at11/116+166364..173331phytochelatin synthase, putative, expressed
LOC_Os06g01270OsAffx.15210.1.S1_at11/116+177343..177894hypothetical protein
LOC_Os06g01280OsAffx.15211.1.S1_at11/116+179215..180423hypothetical protein
LOC_Os06g01290Os.14640.1.S1_at3/116+181155..183321expressed protein
LOC_Os06g01304Os.11259.2.S1_at11/116+184697..190449Spotted leaf protein 11, putative, expressed
LOC_Os06g01304Os.11259.1.S1_a_at11/116+184697..190449Spotted leaf protein 11, putative, expressed
LOC_Os06g01320OsAffx.15212.1.S1_at11/116+194018..207583'chromo' domain containing protein, expressed
LOC_Os06g01320Os.18567.1.S1_x_at11/116+194018..207583'chromo' domain containing protein, expressed
LOC_Os06g01320Os.52692.1.S1_x_at10/116+194018..207583'chromo' domain containing protein, expressed
LOC_Os06g01340OsAffx.27416.1.S1_at11/116+208204..209107CCT motif family protein
LOC_Os06g01350Os.8578.1.S1_at11/116+212020..213695Transferase family protein, expressed
LOC_Os06g01350OsAffx.28276.1.S1_x_at1/116+212020..213695Transferase family protein, expressed
LOC_Os06g01360Os.11622.1.S1_at10/116+214046..217208Homogentisate 1,2-dioxygenase, putative, expressed
LOC_Os06g01370Os.14023.2.S1_at11/116+218460..220117expressed protein
LOC_Os06g01370Os.14023.2.S1_x_at11/116+218460..220117expressed protein
LOC_Os06g01370Os.14023.1.S1_x_at11/116+218460..220117expressed protein
LOC_Os06g01370Os.14023.1.S1_at10/116+218460..220117expressed protein
LOC_Os06g01390Os.9192.1.S1_at11/116+226847..231808Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390Os.9192.2.S1_x_at11/116+226847..231808Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390Os.9192.2.S1_at11/116+226847..231808Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390OsAffx.28164.2.S1_at1/116+226847..231808Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006333biological_processchromatin assembly or disassembly
GO:0006342biological_processchromatin silencing
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003682molecular_functionchromatin binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15212.1.S1_at--1111--911Chr06:206984..207008 (25 bp)
AGGCTTGAATACAGTGCCTGTTGTA
LOC_Os06g01320
OsAffx.15212.1.S1_at--92--2131Chr06:206994..207018 (25 bp)
ACAGTGCCTGTTGTAGGCTCGGGTT
LOC_Os06g01320
OsAffx.15212.1.S1_at--447--6931Chr06:207006..207030 (25 bp)
GTAGGCTCGGGTTTGCCGCCAAGTA
LOC_Os06g01320
OsAffx.15212.1.S1_at--1137--10271Chr06:207017..207041 (25 bp)
TTTGCCGCCAAGTAGGTCCATGTCA
LOC_Os06g01320
OsAffx.15212.1.S1_at--1102--1031Chr06:207030..207054 (25 bp)
AGGTCCATGTCAGATTCGGTGTCGC
LOC_Os06g01320
OsAffx.15212.1.S1_at--517--9652Chr06:207039..207063 (25 bp)
TCAGATTCGGTGTCGCTGGATGCAT
LOC_Os06g01320
OsAffx.15212.1.S1_at--957--7451Chr06:207048..207072 (25 bp)
GTGTCGCTGGATGCATGGCTTACAT
LOC_Os06g01320
OsAffx.15212.1.S1_at--945--4931Chr06:207060..207084 (25 bp)
GCATGGCTTACATCCAATCTTGGTC
LOC_Os06g01320
OsAffx.15212.1.S1_at--546--571Chr06:207071..207095 (25 bp)
ATCCAATCTTGGTCTGAAGGACGGT
LOC_Os06g01320
OsAffx.15212.1.S1_at--879--951Chr06:207088..207112 (25 bp)
AGGACGGTGAAACCAGCACACCTCG
LOC_Os06g01320
OsAffx.15212.1.S1_at--372--7911Chr06:207529..207553 (25 bp)
GGTTGCTTGATTGGTTGTAGTCGAC
LOC_Os06g01320
Target Sequence 
AGGCTTGAATACAGTGCCTGTTGTAGGCTCGGGTTTGCCGCCAAGTAGGTCCATGTCAGATTCGGTGTCGCTGGATGCAT
GGCTTACATCCAATCTTGGTCTGAAGGACGGTGAAACCAGCACACCTCGCACTCGCATGGATAGTCATCGTACAGTAGAT
GTGGTGTGCTTGTCCGATGACGAACCAGAAGAGCACTAGAGCTAGAGCTAGACTGACCTGACTTTTGTAGTACAGCAGTA
TTTTCTTGGAATGCCATTTTTTGCCTGCCTGGCACAAGGAGCTGAATTTGGCCGGACTGGTGGCTTGCATGTATATGTTG
TTACTACTAGTTTGTTATTAGTAGTACCATTCCATTCTAGCTTAGCTTGTAAGCTGGGTGGGTTGGGGTTCCCTTCCCTC
CAGGCCTTGTGCAGCATGCCTAGTAAGGTCTGCTAGGGTAACTTAGGTTGTTGTAAATAGTACTAAGTAATTAGTACTGT
ACAAGTAATAACTTGCTAACCAGCCAACCAGGAAGTGAATTAAGCATGGTGGTAATGGCCTCCTTGGTTGCTTGATTGGT
TGTAGTCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis