Browse Element(s) Details


Os.9192.1.S1_at

Description gb:AK060849.1
DB_XREF= gi:32970867
TID=Os.9192.1
CNT=36
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.9192 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-034-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E06, full insert sequence.
FL= gb:AK098983.1 gb:AK060849.1 gb:AK104349.1 gb:AK100758.1 gb:AK059993.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0139011/11Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01320OsAffx.15212.1.S1_at11/116+194018..207583'chromo' domain containing protein, expressed
LOC_Os06g01320Os.18567.1.S1_x_at11/116+194018..207583'chromo' domain containing protein, expressed
LOC_Os06g01320Os.52692.1.S1_x_at10/116+194018..207583'chromo' domain containing protein, expressed
LOC_Os06g01340OsAffx.27416.1.S1_at11/116+208204..209107CCT motif family protein
LOC_Os06g01350Os.8578.1.S1_at11/116+212020..213695Transferase family protein, expressed
LOC_Os06g01350OsAffx.28276.1.S1_x_at1/116+212020..213695Transferase family protein, expressed
LOC_Os06g01360Os.11622.1.S1_at10/116+214046..217208Homogentisate 1,2-dioxygenase, putative, expressed
LOC_Os06g01370Os.14023.2.S1_at11/116+218460..220117expressed protein
LOC_Os06g01370Os.14023.2.S1_x_at11/116+218460..220117expressed protein
LOC_Os06g01370Os.14023.1.S1_x_at11/116+218460..220117expressed protein
LOC_Os06g01370Os.14023.1.S1_at10/116+218460..220117expressed protein
LOC_Os06g01390Os.9192.1.S1_at11/116+226847..231808Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390Os.9192.2.S1_x_at11/116+226847..231808Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390Os.9192.2.S1_at11/116+226847..231808Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390OsAffx.28164.2.S1_at1/116+226847..231808Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01400Os.52272.1.S1_at11/116+232787..243624glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01400Os.17279.1.S1_s_at11/116+232787..243624glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01400Os.17279.1.S1_at11/116+232787..243624glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01410Os.7390.1.S1_at10/116+243855..246786glutamine cyclotransferase precursor, putative, expressed
LOC_Os06g01420NANA6+250421..256376retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0001676biological_processlong-chain fatty acid metabolism
GO:0006635biological_processfatty acid beta-oxidation
GO:0005777cellular_componentperoxisome
GO:0003997molecular_functionacyl-CoA oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9192.1.S1_at--733--2711Chr06:230974..230998 (25 bp)
AAGCATCTGGGTGACTTCCTGTCGA
LOC_Os06g01390
Os.9192.1.S1_at--893--1931Chr06:231216..231240 (25 bp)
ACGGCAATGTTTACCCGGCGCTGTA
LOC_Os06g01390
Os.9192.1.S1_at--316--2591Chr06:231266..231290 (25 bp)
AACGACACGGATGTGCCGGACGGTT
LOC_Os06g01390
Os.9192.1.S1_at--243--9171Chr06:231279..231303 (25 bp)
TGCCGGACGGTTACCAGGAGCACCT
LOC_Os06g01390
Os.9192.1.S1_at--1040--2691Chr06:231329..231353 (25 bp)
AAGCTCTCCAGGCTATGATCATCCA
LOC_Os06g01390
Os.9192.1.S1_at--51--1551Chr06:231428..231452 (25 bp)
AGCATATGCAAGGTGCTGGCTGGCT
LOC_Os06g01390
Os.9192.1.S1_at--294--8491Chr06:231444..231468 (25 bp)
TGGCTGGCTGCTAGTATTTTCTTTT
LOC_Os06g01390
Os.9192.1.S1_at--714--5891Chr06:231494..231518 (25 bp)
GAGCTGGTATTGTCTTATTTATTTG
LOC_Os06g01390
Os.9192.1.S1_at--840--5891Chr06:231523..231547 (25 bp)
GAGCTGGTATTGTATGTCTGGTGAT
LOC_Os06g01390
Os.9192.1.S1_at--63--10171Chr06:231552..231576 (25 bp)
TATAGCTGTAACTGTGAACTTCACC
LOC_Os06g01390
Os.9192.1.S1_at--726--3711Chr06:231590..231614 (25 bp)
CTCAAGGGCATATGCATTCTACTCC
LOC_Os06g01390
Target Sequence 
AAGCATCTGGGTGACTTCCTGTCGACGGGGAGCATCACAGCAAGGCAGGGAGCGCTGGCAAACGAGCAGCTGGGAAAGCT
GTATGCGCAGGTGCGGCCGAACGCGGTGGCGCTGGTGGACGCGTTCAACTACACCGACCACTACCTGGGGTCGGTGCTGG
GGCGCTACGACGGCAATGTTTACCCGGCGCTGTACGAGGAGGCGTGGAAGGACCCCCTCAACGACACGGATGTGCCGGAC
GGTTACCAGGAGCACCTCCGCCCTCTGCTCAAGCAGCAGCTCAAGCTCTCCAGGCTATGATCATCCATCCATCATCCTCC
CTTTCTTGCTCTATCAATCATATCATACTGCATACGATTTGAGTAGTAGTAAAATAACACCAGCATATGCAAGGTGCTGG
CTGGCTGCTAGTATTTTCTTTTTCTTTATAATTTATTTATTTGGGGAGAGCTGGTATTGTCTTATTTATTTGGGAAGAGC
TGGTATTGTATGTCTGGTGATTTGGTATAGCTGTAACTGTGAACTTCACCACATCTCCCCCTTCTCAAGGGCATATGCAT
TCTACTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9192.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis