Browse Element(s) Details


Os.14023.1.S1_at

Description gb:AK071627.1
DB_XREF= gi:32981650
TID=Os.14023.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14023 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023107F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023107F06, full insert sequence.
FL= gb:AK071627.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0137010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01320OsAffx.15212.1.S1_at11/116+194018..207583'chromo' domain containing protein, expressed
LOC_Os06g01320Os.18567.1.S1_x_at11/116+194018..207583'chromo' domain containing protein, expressed
LOC_Os06g01320Os.52692.1.S1_x_at10/116+194018..207583'chromo' domain containing protein, expressed
LOC_Os06g01340OsAffx.27416.1.S1_at11/116+208204..209107CCT motif family protein
LOC_Os06g01350Os.8578.1.S1_at11/116+212020..213695Transferase family protein, expressed
LOC_Os06g01350OsAffx.28276.1.S1_x_at1/116+212020..213695Transferase family protein, expressed
LOC_Os06g01360Os.11622.1.S1_at10/116+214046..217208Homogentisate 1,2-dioxygenase, putative, expressed
LOC_Os06g01370Os.14023.2.S1_at11/116+218460..220117expressed protein
LOC_Os06g01370Os.14023.2.S1_x_at11/116+218460..220117expressed protein
LOC_Os06g01370Os.14023.1.S1_x_at11/116+218460..220117expressed protein
LOC_Os06g01370Os.14023.1.S1_at10/116+218460..220117expressed protein
LOC_Os06g01390Os.9192.1.S1_at11/116+226847..231808Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390Os.9192.2.S1_x_at11/116+226847..231808Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390Os.9192.2.S1_at11/116+226847..231808Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390OsAffx.28164.2.S1_at1/116+226847..231808Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01400Os.52272.1.S1_at11/116+232787..243624glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01400Os.17279.1.S1_s_at11/116+232787..243624glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01400Os.17279.1.S1_at11/116+232787..243624glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01410Os.7390.1.S1_at10/116+243855..246786glutamine cyclotransferase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14023.1.S1_at--1010--3891Chr06:218519..218543 (25 bp)
CTGGGATGTCTTACTACACCTTGTT
LOC_Os06g01370
Os.14023.1.S1_at--629--7991Chr06:218516..218540 (25 bp)
GGATGTCTTACTACACCTTGTTGTG
LOC_Os06g01370
Os.14023.1.S1_at--364--7151Chr06:218512..218536 (25 bp)
GTCTTACTACACCTTGTTGTGAGCT
LOC_Os06g01370
Os.14023.1.S1_at--1136--9891Chr06:218508..218532 (25 bp)
TACTACACCTTGTTGTGAGCTGCAA
LOC_Os06g01370
Os.14023.1.S1_at--409--2171Chr06:218504..218528 (25 bp)
ACACCTTGTTGTGAGCTGCAATGTT
LOC_Os06g01370
Os.14023.1.S1_at--1151--3611Chr06:218500..218524 (25 bp)
CTTGTTGTGAGCTGCAATGTTTGCG
LOC_Os06g01370
Os.14023.1.S1_at--1002--5891Chr06:218492..218516 (25 bp)
GAGCTGCAATGTTTGCGTGCATGTT
LOC_Os06g01370
Os.14023.1.S1_at--530--5191Chr06:218487..218511 (25 bp)
GCAATGTTTGCGTGCATGTTTAACA
LOC_Os06g01370
Os.14023.1.S1_at--1075--4652Chr12:2485873..2486013 (24 bp)
GCGTGCATGTTTAACAAAGCTGTGT
NONE
Os.14023.1.S1_at--784--2351Chr06:218463..218487 (25 bp)
AAAGCTGTGTTATATGTGTTTGTTC
LOC_Os06g01370
Os.14023.1.S1_at--615--4731Chr06:218460..218484 (25 bp)
GCTGTGTTATATGTGTTTGTTCACC
NONE
Target Sequence 
CTGGGATGTCTTACTACACCTTGTTGTGAGCTGCAATGTTTGCGTGCATGTTTAACAAAGCTGTGTTATATGTGTTTGTT
CACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14023.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis