Browse Element(s) Details

Os.9192.2.S1_at

Description

gb:AK063051.1
DB_XREF= gi:32973069
TID=Os.9192.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9192 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-034-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-E05, full insert sequence.
FL= gb:AK063051.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g01390	11/11	Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g01320	OsAffx.15212.1.S1_at	11/11	6	+	194018..207583	'chromo' domain containing protein, expressed
LOC_Os06g01320	Os.18567.1.S1_x_at	11/11	6	+	194018..207583	'chromo' domain containing protein, expressed
LOC_Os06g01320	Os.52692.1.S1_x_at	10/11	6	+	194018..207583	'chromo' domain containing protein, expressed
LOC_Os06g01340	OsAffx.27416.1.S1_at	11/11	6	+	208204..209107	CCT motif family protein
LOC_Os06g01350	Os.8578.1.S1_at	11/11	6	+	212020..213695	Transferase family protein, expressed
LOC_Os06g01350	OsAffx.28276.1.S1_x_at	1/11	6	+	212020..213695	Transferase family protein, expressed
LOC_Os06g01360	Os.11622.1.S1_at	10/11	6	+	214046..217208	Homogentisate 1,2-dioxygenase, putative, expressed
LOC_Os06g01370	Os.14023.2.S1_at	11/11	6	+	218460..220117	expressed protein
LOC_Os06g01370	Os.14023.2.S1_x_at	11/11	6	+	218460..220117	expressed protein
LOC_Os06g01370	Os.14023.1.S1_x_at	11/11	6	+	218460..220117	expressed protein
LOC_Os06g01370	Os.14023.1.S1_at	10/11	6	+	218460..220117	expressed protein
LOC_Os06g01390	Os.9192.1.S1_at	11/11	6	+	226847..231808	Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390	Os.9192.2.S1_x_at	11/11	6	+	226847..231808	Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390	Os.9192.2.S1_at	11/11	6	+	226847..231808	Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390	OsAffx.28164.2.S1_at	1/11	6	+	226847..231808	Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01400	Os.52272.1.S1_at	11/11	6	+	232787..243624	glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01400	Os.17279.1.S1_s_at	11/11	6	+	232787..243624	glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01400	Os.17279.1.S1_at	11/11	6	+	232787..243624	glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01410	Os.7390.1.S1_at	10/11	6	+	243855..246786	glutamine cyclotransferase precursor, putative, expressed
LOC_Os06g01420	NA	NA	6	+	250421..256376	retrotransposon protein, putative, unclassified

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Gene Ontology Classification

GO id	Type	Name
GO:0001676	biological_process	long-chain fatty acid metabolism
GO:0006635	biological_process	fatty acid beta-oxidation
GO:0005777	cellular_component	peroxisome
GO:0003997	molecular_function	acyl-CoA oxidase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.9192.2.S1_at--1146--981	1	Chr06:227168..227192 (25 bp)	TAACAATAACTTTCTCCCTCTTTCT	LOC_Os06g01390
Os.9192.2.S1_at--263--1057	1	Chr06:227197..227221 (25 bp)	TTCTTTGCACAGATAGATAGATAGA	LOC_Os06g01390
Os.9192.2.S1_at--850--649	1	Chr06:227216..227240 (25 bp)	GATAGATTATCAACTTCGGCTCCCC	LOC_Os06g01390
Os.9192.2.S1_at--940--27	1	Chr06:227217..227241 (25 bp)	ATAGATTATCAACTTCGGCTCCCCG	LOC_Os06g01390
Os.9192.2.S1_at--458--1003	1	Chr06:227218..227242 (25 bp)	TAGATTATCAACTTCGGCTCCCCGG	LOC_Os06g01390
Os.9192.2.S1_at--699--653	1	Chr06:227220..227244 (25 bp)	GATTATCAACTTCGGCTCCCCGGAT	LOC_Os06g01390
Os.9192.2.S1_at--591--381	1	Chr06:227238..227262 (25 bp)	CCCGGATCTCTGATTAAATTACCTG	LOC_Os06g01390
Os.9192.2.S1_at--486--225	1	Chr06:227253..227277 (25 bp)	AAATTACCTGTATGATGCTCTTCTT	LOC_Os06g01390
Os.9192.2.S1_at--264--15	1	Chr06:227255..227279 (25 bp)	ATTACCTGTATGATGCTCTTCTTCT	LOC_Os06g01390
Os.9192.2.S1_at--88--1047	1	Chr06:227256..227280 (25 bp)	TTACCTGTATGATGCTCTTCTTCTC	LOC_Os06g01390
Os.9192.2.S1_at--571--997	1	Chr06:227257..227281 (25 bp)	TACCTGTATGATGCTCTTCTTCTCT	LOC_Os06g01390

Target Sequence

TAACAATAACTTTCTCCCTCTTTCTTTCTTTCTTTGCACAGATAGATAGATAGATTATCAACTTCGGCTCCCCGGATCTC
TGATTAAATTACCTGTATGATGCTCTTCTTCTCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis