Browse Element(s) Details

Os.52692.1.S1_x_at

Description

gb:AK068790.1
DB_XREF= gi:32978815
TID=Os.52692.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52692 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013163J20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013163J20, full insert sequence.
FL= gb:AK068790.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g01320	10/11	'chromo' domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g01260	Os.47875.2.S1_at	11/11	6	+	166364..173331	phytochelatin synthase, putative, expressed
LOC_Os06g01270	OsAffx.15210.1.S1_at	11/11	6	+	177343..177894	hypothetical protein
LOC_Os06g01280	OsAffx.15211.1.S1_at	11/11	6	+	179215..180423	hypothetical protein
LOC_Os06g01290	Os.14640.1.S1_at	3/11	6	+	181155..183321	expressed protein
LOC_Os06g01304	Os.11259.2.S1_at	11/11	6	+	184697..190449	Spotted leaf protein 11, putative, expressed
LOC_Os06g01304	Os.11259.1.S1_a_at	11/11	6	+	184697..190449	Spotted leaf protein 11, putative, expressed
LOC_Os06g01320	OsAffx.15212.1.S1_at	11/11	6	+	194018..207583	'chromo' domain containing protein, expressed
LOC_Os06g01320	Os.18567.1.S1_x_at	11/11	6	+	194018..207583	'chromo' domain containing protein, expressed
LOC_Os06g01320	Os.52692.1.S1_x_at	10/11	6	+	194018..207583	'chromo' domain containing protein, expressed
LOC_Os06g01340	OsAffx.27416.1.S1_at	11/11	6	+	208204..209107	CCT motif family protein
LOC_Os06g01350	Os.8578.1.S1_at	11/11	6	+	212020..213695	Transferase family protein, expressed
LOC_Os06g01350	OsAffx.28276.1.S1_x_at	1/11	6	+	212020..213695	Transferase family protein, expressed
LOC_Os06g01360	Os.11622.1.S1_at	10/11	6	+	214046..217208	Homogentisate 1,2-dioxygenase, putative, expressed
LOC_Os06g01370	Os.14023.2.S1_at	11/11	6	+	218460..220117	expressed protein
LOC_Os06g01370	Os.14023.2.S1_x_at	11/11	6	+	218460..220117	expressed protein
LOC_Os06g01370	Os.14023.1.S1_x_at	11/11	6	+	218460..220117	expressed protein
LOC_Os06g01370	Os.14023.1.S1_at	10/11	6	+	218460..220117	expressed protein
LOC_Os06g01390	Os.9192.1.S1_at	11/11	6	+	226847..231808	Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390	Os.9192.2.S1_x_at	11/11	6	+	226847..231808	Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390	Os.9192.2.S1_at	11/11	6	+	226847..231808	Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390	OsAffx.28164.2.S1_at	1/11	6	+	226847..231808	Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006333	biological_process	chromatin assembly or disassembly
GO:0006342	biological_process	chromatin silencing
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0003682	molecular_function	chromatin binding
GO:0004386	molecular_function	helicase activity
GO:0005524	molecular_function	ATP binding
GO:0030528	molecular_function	transcription regulator activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.52692.1.S1_x_at--585--929	1	Chr06:201903..201927 (25 bp)	TCCGAAGATCCTACCTGTCAAAGAC	LOC_Os06g01320
Os.52692.1.S1_x_at--441--561	1	Chr06:201925..201949 (25 bp)	GACAATGATGCTGTGCTGCCTGAAA	LOC_Os06g01320
Os.52692.1.S1_x_at--693--1005	1	Chr06:201951..201975 (25 bp)	TAGTACAGCATCCAGTTCTCATGAA	LOC_Os06g01320
Os.52692.1.S1_x_at--1156--141	1	Chr06:202095..202119 (25 bp)	AGAAAGCCTTCAGGGCACACAGAAA	LOC_Os06g01320
Os.52692.1.S1_x_at--231--141	1	Chr06:202115..202139 (25 bp)	AGAAAGGTCTTCACACCCAACTCAA	LOC_Os06g01320
Os.52692.1.S1_x_at--642--5	1	NONE	ATTGTTGGAATTGCCGGAGACTGTC	NONE
Os.52692.1.S1_x_at--486--525	1	Chr06:203015..203039 (25 bp)	GAATCATCAAGTCAGTCAGGAGCCA	LOC_Os06g01320
Os.52692.1.S1_x_at--133--499	1	Chr06:203051..203072 (22 bp)	GCATGCATTCAACATTGCCCTGTGT	LOC_Os06g01320
Os.52692.1.S1_x_at--1074--465	1	Chr06:203160..203186 (25 bp)	GCGTGCTGCTTCTCTCAAAGCATAA	LOC_Os06g01320
Os.52692.1.S1_x_at--230--117	1	Chr06:203201..203225 (25 bp)	AGTCACTTGCCCTTTCTGTGAGAAA	LOC_Os06g01320
Os.52692.1.S1_x_at--541--533	1	Chr06:203245..203269 (25 bp)	GAAGTGCTCGCTGAATATGTTTATG	LOC_Os06g01320

Target Sequence

TCCGAAGATCCTACCTGTCAAAGACAATGATGCTGTGCTGCCTGAAAATAGTACAGCATCCAGTTCTCATGAAACATCAG
TTGATGACACTTGGCAAGAGCTAGGGGCAGAAAGCCTTCAGGGCACACAGAAAGGTCTTCACACCCAACTCAAGCCAGAG
CTGTCAAAGTTGTATGAATTGTTGGAATTGCCGGAGACTGTCAAATGTTTATGTGAGGAATTACTTGATTACATTTTGAA
GAATCATCAAGTCAGTCAGGAGCCAAAGGGCATATTGCATGCATTCAACATTGCCCTGTGTTGGCGTGCTGCTTCTCTCA
AAGCATAAGATCAATCGAAGAGAGTCACTTGCCCTTTCTGTGAGAAACTTGAACTATGAGTGCGATGAAGTGCTCGCTGA
ATATGTTTATG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis