Browse Element(s) Details


OsAffx.15210.1.S1_at

Description tigr:9634.m00023
TID=OsAffx.15210.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0127011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01230Os.49429.1.S1_at11/116+152418..155618No apical meristem protein, expressed
LOC_Os06g01240OsAffx.27415.1.S1_at11/116+160576..160995hypothetical protein
LOC_Os06g01250Os.53717.1.S1_at11/116+162205..164320Cytochrome P450 family protein, expressed
LOC_Os06g01260Os.47875.2.S1_at11/116+166364..173331phytochelatin synthase, putative, expressed
LOC_Os06g01270OsAffx.15210.1.S1_at11/116+177343..177894hypothetical protein
LOC_Os06g01280OsAffx.15211.1.S1_at11/116+179215..180423hypothetical protein
LOC_Os06g01290Os.14640.1.S1_at3/116+181155..183321expressed protein
LOC_Os06g01304Os.11259.2.S1_at11/116+184697..190449Spotted leaf protein 11, putative, expressed
LOC_Os06g01304Os.11259.1.S1_a_at11/116+184697..190449Spotted leaf protein 11, putative, expressed
LOC_Os06g01320OsAffx.15212.1.S1_at11/116+194018..207583'chromo' domain containing protein, expressed
LOC_Os06g01320Os.18567.1.S1_x_at11/116+194018..207583'chromo' domain containing protein, expressed
LOC_Os06g01320Os.52692.1.S1_x_at10/116+194018..207583'chromo' domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15210.1.S1_at--837--4231Chr06:177531..177555 (25 bp)
CCGATTACACCGTCTCTATTGAAGA
LOC_Os06g01270
OsAffx.15210.1.S1_at--387--6251Chr06:177504..177528 (25 bp)
GATGGTTCAAAGTTCCCGGAGTCTA
LOC_Os06g01270
OsAffx.15210.1.S1_at--1019--6511Chr06:177493..177517 (25 bp)
GTTCCCGGAGTCTAGGAATCCTAAG
LOC_Os06g01270
OsAffx.15210.1.S1_at--1158--8171Chr06:177479..177503 (25 bp)
GGAATCCTAAGCAGTGCAACGTACA
LOC_Os06g01270
OsAffx.15210.1.S1_at--590--9011Chr06:177465..177489 (25 bp)
TGCAACGTACAGTTTATCGCCGGGC
LOC_Os06g01270
OsAffx.15210.1.S1_at--328--531Chr06:177450..177474 (25 bp)
ATCGCCGGGCTGTTAGTTGTTGGAC
LOC_Os06g01270
OsAffx.15210.1.S1_at--1131--1231Chr06:177436..177460 (25 bp)
AGTTGTTGGACACCGTTCAGAAGCA
LOC_Os06g01270
OsAffx.15210.1.S1_at--903--1531Chr06:177415..177439 (25 bp)
AGCATACTCCGCACGTACAGTTTAT
LOC_Os06g01270
OsAffx.15210.1.S1_at--422--9871Chr06:177400..177424 (25 bp)
TACAGTTTATCGCTGGGCTCCATAT
LOC_Os06g01270
OsAffx.15210.1.S1_at--1048--8631Chr06:177387..177411 (25 bp)
TGGGCTCCATATCCTGAACCACGTG
LOC_Os06g01270
OsAffx.15210.1.S1_at--134--8991Chr06:177373..177397 (25 bp)
TGAACCACGTGGTCGATCGGCTGTG
LOC_Os06g01270
Target Sequence 
CCGATTACACCGTCTCTATTGAAGAATGATGGTTCAAAGTTCCCGGAGTCTAGGAATCCTAAGCAGTGCAACGTACAGTT
TATCGCCGGGCTGTTAGTTGTTGGACACCGTTCAGAAGCATACTCCGCACGTACAGTTTATCGCTGGGCTCCATATCCTG
AACCACGTGGTCGATCGGCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis