Browse Element(s) Details


Os.53717.1.S1_at

Description gb:AK099468.1
DB_XREF= gi:32984677
TID=Os.53717.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53717 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013023N04, full insert sequence.
FL= gb:AK105993.1 gb:AK099468.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0125011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01170Os.39009.1.S1_at11/116+130104..137354PHD-finger family protein, expressed
LOC_Os06g01180Os.18360.1.S1_at11/116+137513..138803expressed protein
LOC_Os06g01190NANA6+139965..140255hypothetical protein
LOC_Os06g01200Os.49638.1.S1_at11/116+141315..145642Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g01210Os.7915.1.S1_a_at11/116+148387..149246Plastocyanin, chloroplast precursor, putative, expressed
LOC_Os06g01220OsAffx.15209.1.S1_at11/116+149985..151936hypothetical protein
LOC_Os06g01230Os.49429.1.S1_at11/116+152418..155618No apical meristem protein, expressed
LOC_Os06g01240OsAffx.27415.1.S1_at11/116+160576..160995hypothetical protein
LOC_Os06g01250Os.53717.1.S1_at11/116+162205..164320Cytochrome P450 family protein, expressed
LOC_Os06g01260Os.47875.2.S1_at11/116+166364..173331phytochelatin synthase, putative, expressed
LOC_Os06g01270OsAffx.15210.1.S1_at11/116+177343..177894hypothetical protein
LOC_Os06g01280OsAffx.15211.1.S1_at11/116+179215..180423hypothetical protein
LOC_Os06g01290Os.14640.1.S1_at3/116+181155..183321expressed protein
LOC_Os06g01304Os.11259.2.S1_at11/116+184697..190449Spotted leaf protein 11, putative, expressed
LOC_Os06g01304Os.11259.1.S1_a_at11/116+184697..190449Spotted leaf protein 11, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009813biological_processflavonoid biosynthesis
GO:0016711molecular_functionflavonoid 3'-monooxygenase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53717.1.S1_at--21--10671Chr06:163826..163850 (25 bp)
TTCCTGGCCGCGCTTGTGCAGTGCT
LOC_Os06g01250
Os.53717.1.S1_at--104--4991Chr06:163988..164012 (25 bp)
GCATCCTCGATCGTCGATACGTACA
LOC_Os06g01250
Os.53717.1.S1_at--207--6491Chr06:164003..164027 (25 bp)
GATACGTACACCTGCGAGCCTGCGA
LOC_Os06g01250
Os.53717.1.S1_at--437--5871Chr06:164018..164042 (25 bp)
GAGCCTGCGATCCTGATCCATCCAT
LOC_Os06g01250
Os.53717.1.S1_at--700--8811Chr06:164050..164074 (25 bp)
TGTTGACTTGTTACTAGCACCTGCT
LOC_Os06g01250
Os.53717.1.S1_at--1154--9991Chr06:164064..164088 (25 bp)
TAGCACCTGCTTTGTTTTACGTACC
LOC_Os06g01250
Os.53717.1.S1_at--285--10791Chr06:164075..164099 (25 bp)
TTGTTTTACGTACCTCACATCAAAT
LOC_Os06g01250
Os.53717.1.S1_at--101--7071Chr06:164131..164155 (25 bp)
GTAAGCTATCTCATTTTGAGTCAAT
LOC_Os06g01250
Os.53717.1.S1_at--652--1731Chr06:164188..164212 (25 bp)
ACCTTGTTTGGTCCTACTCATGGCC
LOC_Os06g01250
Os.53717.1.S1_at--996--4271Chr06:164215..164239 (25 bp)
CCTGCTCATATCTACTTGGCTTTTA
LOC_Os06g01250
Os.53717.1.S1_at--174--10451Chr06:164237..164261 (25 bp)
TTAGCAACCCTTATCCTTGGAGAAG
LOC_Os06g01250
Target Sequence 
TTCCTGGCCGCGCTTGTGCAGTGCTTTGACTGGGCGCCGCCGCCGTCGCAGCCGCTGCCGCTTGACATGGAGGAGGCGGC
GGGGCTCGTGTCCGCCCGCAAGCACCCGCTCCTCCTCCTCCCAACGCCGCGCATCCAACCGCTCCCTTCCTTCTACTCCT
GAGCATCCTCGATCGTCGATACGTACACCTGCGAGCCTGCGATCCTGATCCATCCATTTGTTTTTGTTGACTTGTTACTA
GCACCTGCTTTGTTTTACGTACCTCACATCAAATAATTCTTATTCAACTCAAAATTAAGCTACAAGTAAGCTATCTCATT
TTGAGTCAATGAGTAGAACAAAATATCATGGGCAGGGGCTCGACCTTGTTTGGTCCTACTCATGGCCACCCTGCTCATAT
CTACTTGGCTTTTAGCAACCCTTATCCTTGGAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53717.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis