Browse Element(s) Details


Os.11259.2.S1_at

Description gb:AK067611.1
DB_XREF= gi:32977629
TID=Os.11259.2
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11259 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078K06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111G15, full insert sequence.
FL= gb:AK067611.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0130411/11Spotted leaf protein 11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01240OsAffx.27415.1.S1_at11/116+160576..160995hypothetical protein
LOC_Os06g01250Os.53717.1.S1_at11/116+162205..164320Cytochrome P450 family protein, expressed
LOC_Os06g01260Os.47875.2.S1_at11/116+166364..173331phytochelatin synthase, putative, expressed
LOC_Os06g01270OsAffx.15210.1.S1_at11/116+177343..177894hypothetical protein
LOC_Os06g01280OsAffx.15211.1.S1_at11/116+179215..180423hypothetical protein
LOC_Os06g01290Os.14640.1.S1_at3/116+181155..183321expressed protein
LOC_Os06g01304Os.11259.2.S1_at11/116+184697..190449Spotted leaf protein 11, putative, expressed
LOC_Os06g01304Os.11259.1.S1_a_at11/116+184697..190449Spotted leaf protein 11, putative, expressed
LOC_Os06g01320OsAffx.15212.1.S1_at11/116+194018..207583'chromo' domain containing protein, expressed
LOC_Os06g01320Os.18567.1.S1_x_at11/116+194018..207583'chromo' domain containing protein, expressed
LOC_Os06g01320Os.52692.1.S1_x_at10/116+194018..207583'chromo' domain containing protein, expressed
LOC_Os06g01340OsAffx.27416.1.S1_at11/116+208204..209107CCT motif family protein
LOC_Os06g01350Os.8578.1.S1_at11/116+212020..213695Transferase family protein, expressed
LOC_Os06g01350OsAffx.28276.1.S1_x_at1/116+212020..213695Transferase family protein, expressed
LOC_Os06g01360Os.11622.1.S1_at10/116+214046..217208Homogentisate 1,2-dioxygenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11259.2.S1_at--3--7171Chr06:189754..189778 (25 bp)
GTCTGCATCATCGTCGGCTATGTAT
LOC_Os06g01304
Os.11259.2.S1_at--736--7791Chr06:189843..189867 (25 bp)
GGTCCACTGTCCCTGATGATGGCGA
LOC_Os06g01304
Os.11259.2.S1_at--466--1631Chr06:189870..189894 (25 bp)
AGCGGATGGCGCAGTGGATCACCAC
LOC_Os06g01304
Os.11259.2.S1_at--348--7311Chr06:190029..190053 (25 bp)
GTGCTGGAGCTGTGACCTCAACTAA
LOC_Os06g01304
Os.11259.2.S1_at--524--2531Chr06:190048..190072 (25 bp)
AACTAATCCCGTTCCTTGGGATGAT
LOC_Os06g01304
Os.11259.2.S1_at--227--4771Chr06:190099..190123 (25 bp)
GCTGCAGATACTCATGGATGGCTCT
LOC_Os06g01304
Os.11259.2.S1_at--1068--7991Chr06:190114..190138 (25 bp)
GGATGGCTCTCACTAATTTACTGAC
LOC_Os06g01304
Os.11259.2.S1_at--666--9911Chr06:190132..190156 (25 bp)
TACTGACTGACTACATTCACAAGTT
LOC_Os06g01304
Os.11259.2.S1_at--446--4871Chr06:190241..190265 (25 bp)
GCTAGGTTGCTGCTGATCAATCCAT
LOC_Os06g01304
Os.11259.2.S1_at--975--1371Chr06:190308..190332 (25 bp)
AGACCGGTTTATTACTAGCACAAGA
LOC_Os06g01304
Os.11259.2.S1_at--845--9531Chr06:190383..190407 (25 bp)
TCTTTTTTCTTTGACACGTAGGATG
LOC_Os06g01304
Target Sequence 
GTCTGCATCATCGTCGGCTATGTATTCCCCGCTGTCAGCCGTGTCCGCGCCGGCGAAGGCGCCGTCGAGCCAGCAGCAGC
TGCGGCCTTGGTCCACTGTCCCTGATGATGGCGAGCAGCGGATGGCGCAGTGGATCACCACCGATTCAGACTTTGTGGTG
CTGGAGCTGTGACCTCAACTAATCCCGTTCCTTGGGATGATGGAGTGGAGGCCAGGCAAGCAATTAAGCTGCAGATACTC
ATGGATGGCTCTCACTAATTTACTGACTGACTACATTCACAAGTTTAGACCGATGGAGGAGGGGAAGACGGAAGCAGCGA
AGACAGTAGTATTATTTATGAATCTCAACGGCCAAGAGCAGAGGCTGCAGCTAGGTTGCTGCTGATCAATCCATATCATG
AGGAAACTTGAATGGATTATTAAAAGTAATAATAACAGACCGGTTTATTACTAGCACAAGAGGAGAGTCATCGATGAAAT
ACTAGTGCGATGTATAGTATACGTTTGTGTTTCTTTTTTCTTTGACACGTAGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11259.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis