Browse Element(s) Details


Os.11259.1.S1_a_at

Description gb:AK071080.1
DB_XREF= gi:32981103
TID=Os.11259.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.11259 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078K06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078K06, full insert sequence.
FL= gb:AK071080.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0130411/11Spotted leaf protein 11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01240OsAffx.27415.1.S1_at11/116+160576..160995hypothetical protein
LOC_Os06g01250Os.53717.1.S1_at11/116+162205..164320Cytochrome P450 family protein, expressed
LOC_Os06g01260Os.47875.2.S1_at11/116+166364..173331phytochelatin synthase, putative, expressed
LOC_Os06g01270OsAffx.15210.1.S1_at11/116+177343..177894hypothetical protein
LOC_Os06g01280OsAffx.15211.1.S1_at11/116+179215..180423hypothetical protein
LOC_Os06g01290Os.14640.1.S1_at3/116+181155..183321expressed protein
LOC_Os06g01304Os.11259.2.S1_at11/116+184697..190449Spotted leaf protein 11, putative, expressed
LOC_Os06g01304Os.11259.1.S1_a_at11/116+184697..190449Spotted leaf protein 11, putative, expressed
LOC_Os06g01320OsAffx.15212.1.S1_at11/116+194018..207583'chromo' domain containing protein, expressed
LOC_Os06g01320Os.18567.1.S1_x_at11/116+194018..207583'chromo' domain containing protein, expressed
LOC_Os06g01320Os.52692.1.S1_x_at10/116+194018..207583'chromo' domain containing protein, expressed
LOC_Os06g01340OsAffx.27416.1.S1_at11/116+208204..209107CCT motif family protein
LOC_Os06g01350Os.8578.1.S1_at11/116+212020..213695Transferase family protein, expressed
LOC_Os06g01350OsAffx.28276.1.S1_x_at1/116+212020..213695Transferase family protein, expressed
LOC_Os06g01360Os.11622.1.S1_at10/116+214046..217208Homogentisate 1,2-dioxygenase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11259.1.S1_a_at--1104--6311Chr06:186552..186576 (25 bp)
GATGAACTTCTTGGTGGATCCTACA
LOC_Os06g01304
Os.11259.1.S1_a_at--960--1871Chr06:186590..186614 (25 bp)
ACGAGGCACTTAGTCTTCTGTCAAT
LOC_Os06g01304
Os.11259.1.S1_a_at--118--7151Chr06:186602..186626 (25 bp)
GTCTTCTGTCAATTCTTGCAGGCAA
LOC_Os06g01304
Os.11259.1.S1_a_at--932--2811Chr06:186637..186661 (25 bp)
AAGATTGTAATTGCGCGGTCAGAAC
LOC_Os06g01304
Os.11259.1.S1_a_at--747--1431Chr06:186657..186681 (25 bp)
AGAACCAATTCCTCCACTTGTTGAG
LOC_Os06g01304
Os.11259.1.S1_a_at--279--2411Chr06:186689..186713 (25 bp)
AAACAGGGTCTCCTCGCAATAGGGA
LOC_Os06g01304
Os.11259.1.S1_a_at--413--10111Chr06:186731..186755 (25 bp)
TATGGTTGCTCTGTTCTGCTGATAC
LOC_Os06g01304
Os.11259.1.S1_a_at--1015--6451Chr06:186751..186775 (25 bp)
GATACTGAGCAGACATTGGCTGCAA
LOC_Os06g01304
Os.11259.1.S1_a_at--319--9031Chr06:186795..186819 (25 bp)
TGCACTCAAGGAGCTGTCAGAAACT
LOC_Os06g01304
Os.11259.1.S1_a_at--424--2351Chr06:186841..186865 (25 bp)
AAAGCTTCTAGCATCCTCGAACTCA
LOC_Os06g01304
Os.11259.1.S1_a_at--1125--551Chr06:186853..186877 (25 bp)
ATCCTCGAACTCATGCACCAAGCAA
LOC_Os06g01304
Target Sequence 
GATGAACTTCTTGGTGGATCCTACAGGGGGAATGATTGACGAGGCACTTAGTCTTCTGTCAATTCTTGCAGGCAACCCAG
AAGGCAAGATTGTAATTGCGCGGTCAGAACCAATTCCTCCACTTGTTGAGGTTATCAAAACAGGGTCTCCTCGCAATAGG
GAGAACGCTGCAGCCATTCTATGGTTGCTCTGTTCTGCTGATACTGAGCAGACATTGGCTGCAAAGGCAGCTGGAGTGGA
GGATGCACTCAAGGAGCTGTCAGAAACTGGAACAGATCGTGCAAAGAGGAAAGCTTCTAGCATCCTCGAACTCATGCACC
AAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11259.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis