Browse Element(s) Details


Os.47875.2.S1_at

Description gb:AK071754.1
DB_XREF= gi:32981777
TID=Os.47875.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47875 (NCBI UniGene Cluster)
UG_TITLE=Phytochelatin synthase (PCS1) mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023112B16, full insert sequence.
FL= gb:AK071958.1 gb:AK071754.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0126011/11phytochelatin synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01200Os.49638.1.S1_at11/116+141315..145642Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g01210Os.7915.1.S1_a_at11/116+148387..149246Plastocyanin, chloroplast precursor, putative, expressed
LOC_Os06g01220OsAffx.15209.1.S1_at11/116+149985..151936hypothetical protein
LOC_Os06g01230Os.49429.1.S1_at11/116+152418..155618No apical meristem protein, expressed
LOC_Os06g01240OsAffx.27415.1.S1_at11/116+160576..160995hypothetical protein
LOC_Os06g01250Os.53717.1.S1_at11/116+162205..164320Cytochrome P450 family protein, expressed
LOC_Os06g01260Os.47875.2.S1_at11/116+166364..173331phytochelatin synthase, putative, expressed
LOC_Os06g01270OsAffx.15210.1.S1_at11/116+177343..177894hypothetical protein
LOC_Os06g01280OsAffx.15211.1.S1_at11/116+179215..180423hypothetical protein
LOC_Os06g01290Os.14640.1.S1_at3/116+181155..183321expressed protein
LOC_Os06g01304Os.11259.2.S1_at11/116+184697..190449Spotted leaf protein 11, putative, expressed
LOC_Os06g01304Os.11259.1.S1_a_at11/116+184697..190449Spotted leaf protein 11, putative, expressed
LOC_Os06g01320OsAffx.15212.1.S1_at11/116+194018..207583'chromo' domain containing protein, expressed
LOC_Os06g01320Os.18567.1.S1_x_at11/116+194018..207583'chromo' domain containing protein, expressed
LOC_Os06g01320Os.52692.1.S1_x_at10/116+194018..207583'chromo' domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046686biological_processresponse to cadmium ion
GO:0046938biological_processphytochelatin biosynthesis
GO:0005507molecular_functioncopper ion binding
GO:0016756molecular_functionglutathione gamma-glutamylcysteinyltransferase activity
GO:0046870molecular_functioncadmium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47875.2.S1_at--602--10491Chr06:171948..171972 (25 bp)
TTAACTGTTCTATTGCTGGCTTTAC
LOC_Os06g01260
Os.47875.2.S1_at--588--3531Chr06:171972..171996 (25 bp)
CATCCTAGCACATGGGTGGGCATTA
LOC_Os06g01260
Os.47875.2.S1_at--156--3731Chr06:172906..172930 (25 bp)
CTAAGACGGCAACTCCATTATGTGA
LOC_Os06g01260
Os.47875.2.S1_at--1000--831Chr06:172952..172976 (25 bp)
ATGGAGATCCTGTGCCACAATCCCA
LOC_Os06g01260
Os.47875.2.S1_at--738--2271Chr06:172990..173014 (25 bp)
AAATCGCGCAGTTGGTTACCCTGGA
LOC_Os06g01260
Os.47875.2.S1_at--1001--4231Chr06:173053..173077 (25 bp)
CCGTATTACCTTTGTTTCGAGTGAG
LOC_Os06g01260
Os.47875.2.S1_at--5--10771Chr06:173090..173114 (25 bp)
TTGAGACACCTGACCTGAGACGGAT
LOC_Os06g01260
Os.47875.2.S1_at--639--5751Chr06:173108..173132 (25 bp)
GACGGATCCGTGTAGACATGTTCAT
LOC_Os06g01260
Os.47875.2.S1_at--988--731Chr06:173125..173149 (25 bp)
ATGTTCATGTTCATCACCTGTGGTC
LOC_Os06g01260
Os.47875.2.S1_at--513--1771Chr06:173140..173164 (25 bp)
ACCTGTGGTCGTTTCTCTTGTTAGT
LOC_Os06g01260
Os.47875.2.S1_at--1020--4691Chr06:173203..173227 (25 bp)
GCGGCTGGTGTCCTTGCAAAAGTTT
LOC_Os06g01260
Target Sequence 
TTAACTGTTCTATTGCTGGCTTTACATCCTAGCACATGGGTGGGCATTAAAGACGAGAGGCTGAAAGCTGAATTCCAGAG
TCTTATTTCAACAGACATTCTTCATGATGATCTTAAACGAGAGATATTGCATCTAAGACGGCAACTCCATTATGTGAGGT
CCTGTAAAGAGGAGGAATATGGAGATCCTGTGCCACAATCCCATTAACAATGATGCAAATCGCGCAGTTGGTTACCCTGG
AGATGCAAAAAAAAGGGGTTAGAGGAGGAACTACATACTCCGTATTACCTTTGTTTCGAGTGAGGACTTCTCATTTTTGA
GACACCTGACCTGAGACGGATCCGTGTAGACATGTTCATGTTCATCACCTGTGGTCGTTTCTCTTGTTAGTGACAACTGA
CAACTAGCGGGGAGGCACACGCTAATTGTGCGGCTGGTGTCCTTGCAAAAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47875.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis