Browse Element(s) Details


OsAffx.27415.1.S1_at

Description tigr:9634.m00019
TID=OsAffx.27415.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0124011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01170Os.39009.1.S1_at11/116+130104..137354PHD-finger family protein, expressed
LOC_Os06g01180Os.18360.1.S1_at11/116+137513..138803expressed protein
LOC_Os06g01190NANA6+139965..140255hypothetical protein
LOC_Os06g01200Os.49638.1.S1_at11/116+141315..145642Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g01210Os.7915.1.S1_a_at11/116+148387..149246Plastocyanin, chloroplast precursor, putative, expressed
LOC_Os06g01220OsAffx.15209.1.S1_at11/116+149985..151936hypothetical protein
LOC_Os06g01230Os.49429.1.S1_at11/116+152418..155618No apical meristem protein, expressed
LOC_Os06g01240OsAffx.27415.1.S1_at11/116+160576..160995hypothetical protein
LOC_Os06g01250Os.53717.1.S1_at11/116+162205..164320Cytochrome P450 family protein, expressed
LOC_Os06g01260Os.47875.2.S1_at11/116+166364..173331phytochelatin synthase, putative, expressed
LOC_Os06g01270OsAffx.15210.1.S1_at11/116+177343..177894hypothetical protein
LOC_Os06g01280OsAffx.15211.1.S1_at11/116+179215..180423hypothetical protein
LOC_Os06g01290Os.14640.1.S1_at3/116+181155..183321expressed protein
LOC_Os06g01304Os.11259.2.S1_at11/116+184697..190449Spotted leaf protein 11, putative, expressed
LOC_Os06g01304Os.11259.1.S1_a_at11/116+184697..190449Spotted leaf protein 11, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27415.1.S1_at--369--8011Chr06:160906..160930 (25 bp)
GGAGGCCGCACGAATCCACGCCGCG
LOC_Os06g01240
OsAffx.27415.1.S1_at--224--4231Chr06:160877..160901 (25 bp)
CCGAATCCATGTCGCCACTGGTGGG
LOC_Os06g01240
OsAffx.27415.1.S1_at--315--4511Chr06:160829..160853 (25 bp)
GCCGCTGGATCCAGATGACAGCAAC
LOC_Os06g01240
OsAffx.27415.1.S1_at--40--4731Chr06:160826..160850 (25 bp)
GCTGGATCCAGATGACAGCAACGGC
LOC_Os06g01240
OsAffx.27415.1.S1_at--614--2212Chr03:12138867..12138888 (22 bp)
ACAACGATGGTGGCGCTCTGGCGTA
NONE
OsAffx.27415.1.S1_at--287--8471Chr06:160734..160758 (25 bp)
TGGCGCTCTGGCGTAGGTTCAAGAT
LOC_Os06g01240
OsAffx.27415.1.S1_at--452--4811Chr06:160730..160754 (25 bp)
GCTCTGGCGTAGGTTCAAGATGCTC
LOC_Os06g01240
OsAffx.27415.1.S1_at--281--3911Chr06:160727..160751 (25 bp)
CTGGCGTAGGTTCAAGATGCTCGTC
LOC_Os06g01240
OsAffx.27415.1.S1_at--522--4031Chr06:160723..160747 (25 bp)
CGTAGGTTCAAGATGCTCGTCGTCG
LOC_Os06g01240
OsAffx.27415.1.S1_at--834--971Chr06:160619..160643 (25 bp)
AGGAGCTTCGCCGTACCATCCTGGA
LOC_Os06g01240
OsAffx.27415.1.S1_at--398--4911Chr06:160615..160639 (25 bp)
GCTTCGCCGTACCATCCTGGAGATG
LOC_Os06g01240
Target Sequence 
GGAGGCCGCACGAATCCACGCCGCGCCGCCCGAATCCATGTCGCCACTGGTGGGGACGGAGGCAACGGAGGTCGGCCGCC
GCTGGATCCAGATGACAGCAACGGCAACCTCGGGGACGACTGGCGACGGTGCACACGACGACGACAGCGGCTGGCGACCT
CGACAACGATGGTGGCGCTCTGGCGTAGGTTCAAGATGCTCGTCGTCGTGCTCTCCGCCGCCGGCTCCCCAACAACCCCG
CCACGGCCCCCTCCTCGCCGGCGGCAGCGGCCCAGTGCCCGCGGTCGAGGAGCTTCGCCGTACCATCCTGGAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis