Browse Element(s) Details


Os.7915.1.S1_a_at

Description gb:AF093636.1
DB_XREF= gi:3885895
TID=Os.7915.1
CNT=43
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.7915 (NCBI UniGene Cluster)
DEF=Oryza sativa plastocyanin precursor, mRNA, complete cds.
PROD=plastocyanin precursor
FL= gb:AF093636.1 gb:AK070447.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0121011/11Plastocyanin, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01150OsAffx.15208.1.S1_at11/116+125232..126339hypothetical protein
LOC_Os06g01160OsAffx.4690.1.S1_at11/116+129355..129738hypothetical protein
LOC_Os06g01170Os.39009.1.S1_at11/116+130104..137354PHD-finger family protein, expressed
LOC_Os06g01180Os.18360.1.S1_at11/116+137513..138803expressed protein
LOC_Os06g01190NANA6+139965..140255hypothetical protein
LOC_Os06g01200Os.49638.1.S1_at11/116+141315..145642Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g01210Os.7915.1.S1_a_at11/116+148387..149246Plastocyanin, chloroplast precursor, putative, expressed
LOC_Os06g01220OsAffx.15209.1.S1_at11/116+149985..151936hypothetical protein
LOC_Os06g01230Os.49429.1.S1_at11/116+152418..155618No apical meristem protein, expressed
LOC_Os06g01240OsAffx.27415.1.S1_at11/116+160576..160995hypothetical protein
LOC_Os06g01250Os.53717.1.S1_at11/116+162205..164320Cytochrome P450 family protein, expressed
LOC_Os06g01260Os.47875.2.S1_at11/116+166364..173331phytochelatin synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009411biological_processresponse to UV
GO:0042221biological_processresponse to chemical stimulus
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7915.1.S1_a_at--1085--9111Chr06:148896..148920 (25 bp)
TGCTGGTGTTCGAGCCGAACGACTT
LOC_Os06g01210
Os.7915.1.S1_a_at--521--4911Chr06:148827..148851 (25 bp)
GCTTCCCTCACAACGTGGTGTTCGA
LOC_Os06g01210
Os.7915.1.S1_a_at--153--8251Chr06:148702..148726 (25 bp)
GGCACATACGGCTTCTACTGCGAGC
LOC_Os06g01210
Os.7915.1.S1_a_at--358--8231Chr06:148654..148678 (25 bp)
GGCAAGGTCACCGTCAACTAATTAT
LOC_Os06g01210
Os.7915.1.S1_a_at--670--3131Chr06:148635..148659 (25 bp)
AATTATTCTTTCTTCTCAATCTAAA
LOC_Os06g01210
Os.7915.1.S1_a_at--1081--3731Chr06:148621..148645 (25 bp)
CTCAATCTAAATATGCCTCCTACGG
LOC_Os06g01210
Os.7915.1.S1_a_at--696--9251Chr06:148604..148628 (25 bp)
TCCTACGGCTCTATCCTATATATAT
LOC_Os06g01210
Os.7915.1.S1_a_at--889--231Chr06:148579..148603 (25 bp)
ATATATCGATTTGTCCATCGCGAAT
LOC_Os06g01210
Os.7915.1.S1_a_at--1066--10771Chr06:148569..148593 (25 bp)
TTGTCCATCGCGAATATACTACGTA
LOC_Os06g01210
Os.7915.1.S1_a_at--257--9931Chr06:148550..148574 (25 bp)
TACGTACCGATGATCTGTTCCTCAG
LOC_Os06g01210
Os.7915.1.S1_a_at--834--9251Chr06:148532..148556 (25 bp)
TCCTCAGTTTTCTCTTGTGTGTATG
LOC_Os06g01210
Target Sequence 
TGCTGGTGTTCGAGCCGAACGACTTCACCGTCAAGTCCGGCGAGACCATCACGTTCAAGAACAACGCCGGCTTCCCTCAC
AACGTGGTGTTCGACGAGGACGCGGTTCCGAGCGGCGTCGACGTGTCCAAGATATCGCAGGAGGAGTACCTCAACGCCCC
CGGCGAGACCTTCTCCGTCACGCTCACCGTCCCCGGCACATACGGCTTCTACTGCGAGCCGCACGCCGGAGCTGGGATGG
TCGGCAAGGTCACCGTCAACTAATTATTCTTTCTTCTCAATCTAAATATGCCTCCTACGGCTCTATCCTATATATATATA
TATCGATTTGTCCATCGCGAATATACTACGTACCGATGATCTGTTCCTCAGTTTTCTCTTGTGTGTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7915.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis