Browse Element(s) Details


OsAffx.15208.1.S1_at

Description tigr:9634.m00010
TID=OsAffx.15208.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0115011/11hypothetical protein
LOC_Os12g302901/11retrotransposon protein, putative, unclassified
LOC_Os12g216601/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01090NANA6+96225..100496retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g01100NANA6+105083..105418retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g01110NANA6+107281..108048retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g01120NANA6+108866..109153retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g01130NANA6+111046..112893hypothetical protein
LOC_Os06g01140OsAffx.4689.1.S1_at10/116+120758..123012hypothetical protein
LOC_Os06g01150OsAffx.15208.1.S1_at11/116+125232..126339hypothetical protein
LOC_Os06g01160OsAffx.4690.1.S1_at11/116+129355..129738hypothetical protein
LOC_Os06g01170Os.39009.1.S1_at11/116+130104..137354PHD-finger family protein, expressed
LOC_Os06g01180Os.18360.1.S1_at11/116+137513..138803expressed protein
LOC_Os06g01190NANA6+139965..140255hypothetical protein
LOC_Os06g01200Os.49638.1.S1_at11/116+141315..145642Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g01210Os.7915.1.S1_a_at11/116+148387..149246Plastocyanin, chloroplast precursor, putative, expressed
LOC_Os06g01220OsAffx.15209.1.S1_at11/116+149985..151936hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15208.1.S1_at--1126--2571Chr06:126265..126289 (25 bp)
AACGATGGACAAGCTGACCCCGGAG
LOC_Os06g01150
OsAffx.15208.1.S1_at--252--5551Chr06:126217..126241 (25 bp)
GAAAGACGACTTGCAAAACCGATTT
LOC_Os06g01150
OsAffx.15208.1.S1_at--591--2371Chr06:126202..126226 (25 bp)
AAACCGATTTCTGCATTCGTTCGCA
LOC_Os06g01150
OsAffx.15208.1.S1_at--463--6311Chr06:126123..126147 (25 bp)
GATGACGTAGAAACCAGTTCCGGCA
LOC_Os06g01150
OsAffx.15208.1.S1_at--789--8091Chr06:126037..126061 (25 bp)
GGACCAGGCTGATTACTCTGTCACG
LOC_Os06g01150
OsAffx.15208.1.S1_at--748--9072Chr08:3432578..3432739 (25 bp)
TGCTTCACCATCTGAGGGCTTCGGG
NONE
OsAffx.15208.1.S1_at--55--8971Chr06:125361..125385 (25 bp)
TGAAATCTCCGACGCTTTTGTCATC
LOC_Os06g01150
OsAffx.15208.1.S1_at--468--10391Chr06:125346..125370 (25 bp)
TTTTGTCATCCACGCGTTTAAGTCA
LOC_Os06g01150
OsAffx.15208.1.S1_at--779--6393Chr12:12171960..12172411 (25 bp)
GATCGATACACCACCCAGGAACTAG
LOC_Os12g21660
OsAffx.15208.1.S1_at--114--1131Chr06:125289..125313 (25 bp)
AGTGACACGACGGATCACATCTGCT
LOC_Os06g01150
OsAffx.15208.1.S1_at--774--2091Chr06:125273..125297 (25 bp)
ACATCTGCTCGCAAGCTATTTGAAA
LOC_Os06g01150
Target Sequence 
AACGATGGACAAGCTGACCCCGGAGCAGAAGGCAGAATTTGAAAAGATGAAAGACGACTTGCAAAACCGATTTCTGCATT
CGTTCGCACCGACTCGCTCCGGCACCATGGTTCAGAAATATAAGGTAGTTCTGTCGAACAAGGATGACGTAGAAACCAGT
TCCGGCAAAGATGACAAAGCCAAAGGTGACAATCAAGAGGAAGATCTTGAGGCATTCAAATGTATGCAGGACCAGGCTGA
TTACTCTGTCACGGTCTCTCCCACCGCTGTGACTCACCCGCTGGGTGCTTCACCATCTGAGGGCTTCGGGGGCGGCGAGT
TCGAGCTTGAGCTGTGGTGCCTACCGCGCAAGAGGAATACGATCCCTGAAATCTCCGACGCTTTTGTCATCCACGCGTTT
AAGTCAGGCGTCCGAGATCGATACACCACCCAGGAACTAGTGACACGACGGATCACATCTGCTCGCAAGCTATTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15208.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis