Browse Element(s) Details


Os.18360.1.S1_at

Description gb:AK111058.1
DB_XREF= gi:32996267
TID=Os.18360.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18360 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-D04, full insert sequence.
FL= gb:AK111058.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0118011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01130NANA6+111046..112893hypothetical protein
LOC_Os06g01140OsAffx.4689.1.S1_at10/116+120758..123012hypothetical protein
LOC_Os06g01150OsAffx.15208.1.S1_at11/116+125232..126339hypothetical protein
LOC_Os06g01160OsAffx.4690.1.S1_at11/116+129355..129738hypothetical protein
LOC_Os06g01170Os.39009.1.S1_at11/116+130104..137354PHD-finger family protein, expressed
LOC_Os06g01180Os.18360.1.S1_at11/116+137513..138803expressed protein
LOC_Os06g01190NANA6+139965..140255hypothetical protein
LOC_Os06g01200Os.49638.1.S1_at11/116+141315..145642Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g01210Os.7915.1.S1_a_at11/116+148387..149246Plastocyanin, chloroplast precursor, putative, expressed
LOC_Os06g01220OsAffx.15209.1.S1_at11/116+149985..151936hypothetical protein
LOC_Os06g01230Os.49429.1.S1_at11/116+152418..155618No apical meristem protein, expressed
LOC_Os06g01240OsAffx.27415.1.S1_at11/116+160576..160995hypothetical protein
LOC_Os06g01250Os.53717.1.S1_at11/116+162205..164320Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18360.1.S1_at--115--2011Chr06:138055..138079 (25 bp)
ACTCGTCTGGGCTGATGATCCTCAC
LOC_Os06g01180
Os.18360.1.S1_at--690--2591Chr06:138092..138227 (25 bp)
AACCCACCTCTAGATTACGTGCTTG
LOC_Os06g01180
Os.18360.1.S1_at--153--7311Chr06:138221..138245 (25 bp)
GTGCTTGGGTCGGACGTGATCTACA
LOC_Os06g01180
Os.18360.1.S1_at--638--5471Chr06:138323..138417 (25 bp)
GAACTCCGCAATGATGCTGTACTGG
LOC_Os06g01180
Os.18360.1.S1_at--464--8131Chr06:138443..138467 (25 bp)
GGACTTCCAAGTCGGCTGCATCGAG
LOC_Os06g01180
Os.18360.1.S1_at--121--9871Chr06:138497..138521 (25 bp)
TACACGTGTTGCCTTGTTCATCTTG
LOC_Os06g01180
Os.18360.1.S1_at--377--9091Chr06:138550..138574 (25 bp)
TGCTGCTCTAGCTCCAAATTTTGGG
LOC_Os06g01180
Os.18360.1.S1_at--758--4651Chr06:138574..138598 (25 bp)
GCGTCCCTCATCGAAAGCTGAATTG
LOC_Os06g01180
Os.18360.1.S1_at--159--191Chr06:138614..138638 (25 bp)
ATTTACTCCATCCTTTGTTCTGGAC
LOC_Os06g01180
Os.18360.1.S1_at--535--6991Chr06:138692..138716 (25 bp)
GTACGCTTTTGTTTTCTCCTATTGA
LOC_Os06g01180
Os.18360.1.S1_at--198--5631Chr06:138754..138778 (25 bp)
GACACCATTTAATCGGTCTACTCCT
LOC_Os06g01180
Target Sequence 
ACTCGTCTGGGCTGATGATCCTCACCCGGACTTGCTCAACCCACCTCTAGATTACGTGCTTGGGTCGGACGTGATCTACA
GCGAGGAGGCAGTGGATGATCTGCTGCTCACCCTCAAGCACCTCTCAGCCCCTCACACCACCATCATCCTCGCAGCAGAA
CTCCGCAATGATGCTGTACTGGAGTGCTTCTTGGAGGCAGCAATGGCGGACTTCCAAGTCGGCTGCATCGAGCAACAGCA
ATGGCACCCAGATTTCCGCTCTACACGTGTTGCCTTGTTCATCTTGCTCAAGAAACCACCTTCCCAACCGGACGTGCTGC
TCTAGCTCCAAATTTTGGGCGTCCCTCATCGAAAGCTGAATTGTAGCGGAGTACCAGCATTTACTCCATCCTTTGTTCTG
GACTCTGGAGTTTAATTTTACACCTTTTGCATGTATGGAATTAGGGGGTCAAAACTGTACGCTTTTGTTTTCTCCTATTG
ATTACGTGCACTTCGGAAATGAAATTGAAAATTGTAGAGACACCATTTAATCGGTCTACTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18360.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis