Browse Element(s) Details


OsAffx.15209.1.S1_at

Description tigr:9634.m00017
TID=OsAffx.15209.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0122011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01150OsAffx.15208.1.S1_at11/116+125232..126339hypothetical protein
LOC_Os06g01160OsAffx.4690.1.S1_at11/116+129355..129738hypothetical protein
LOC_Os06g01170Os.39009.1.S1_at11/116+130104..137354PHD-finger family protein, expressed
LOC_Os06g01180Os.18360.1.S1_at11/116+137513..138803expressed protein
LOC_Os06g01190NANA6+139965..140255hypothetical protein
LOC_Os06g01200Os.49638.1.S1_at11/116+141315..145642Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g01210Os.7915.1.S1_a_at11/116+148387..149246Plastocyanin, chloroplast precursor, putative, expressed
LOC_Os06g01220OsAffx.15209.1.S1_at11/116+149985..151936hypothetical protein
LOC_Os06g01230Os.49429.1.S1_at11/116+152418..155618No apical meristem protein, expressed
LOC_Os06g01240OsAffx.27415.1.S1_at11/116+160576..160995hypothetical protein
LOC_Os06g01250Os.53717.1.S1_at11/116+162205..164320Cytochrome P450 family protein, expressed
LOC_Os06g01260Os.47875.2.S1_at11/116+166364..173331phytochelatin synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15209.1.S1_at--417--8091Chr06:150555..150579 (25 bp)
GGCACCGACCCAGAATCGGAAGCTA
LOC_Os06g01220
OsAffx.15209.1.S1_at--1049--3031Chr06:150542..150566 (25 bp)
AATCGGAAGCTAAAGGCGACGGCGT
LOC_Os06g01220
OsAffx.15209.1.S1_at--1108--10631Chr06:150491..150515 (25 bp)
TTCGCTGTTGGACACCGCACTGGAA
LOC_Os06g01220
OsAffx.15209.1.S1_at--143--8151Chr06:150482..150506 (25 bp)
GGACACCGCACTGGAAGTTGTCATC
LOC_Os06g01220
OsAffx.15209.1.S1_at--306--6131Chr06:150437..150461 (25 bp)
GAGGGCCTCACCACTAGAGACCGGT
LOC_Os06g01220
OsAffx.15209.1.S1_at--844--1331Chr06:150422..150446 (25 bp)
AGAGACCGGTGCTCGAGCCCGTCGA
LOC_Os06g01220
OsAffx.15209.1.S1_at--91--571Chr06:150363..150387 (25 bp)
ATCCTCCGCGACTGCGAGCCTGATG
LOC_Os06g01220
OsAffx.15209.1.S1_at--176--2191Chr06:150263..150287 (25 bp)
ACACATAGGTCCCTACAAGCCGGCG
LOC_Os06g01220
OsAffx.15209.1.S1_at--799--10071Chr06:150258..150282 (25 bp)
TAGGTCCCTACAAGCCGGCGCACGA
LOC_Os06g01220
OsAffx.15209.1.S1_at--742--1891Chr06:150225..150249 (25 bp)
ACGTGGTCCTCGCAACGTCCAAGGC
LOC_Os06g01220
OsAffx.15209.1.S1_at--658--8371Chr06:150128..150152 (25 bp)
GGCGAGGACCGCGTTAGCACGTTCC
LOC_Os06g01220
Target Sequence 
GGCACCGACCCAGAATCGGAAGCTAAAGGCGACGGCGTGGGCGAGCGTGGAGGCAGAGGGGCTCTTCGCTGTTGGACACC
GCACTGGAAGTTGTCATCACCGACCGGCGCCCACCCTGGAGGGCCTCACCACTAGAGACCGGTGCTCGAGCCCGTCGACC
GGCGCTCGAGCCCGTCGACCGGCGCGCTGGCCATCCTCCGCGACTGCGAGCCTGATGGCTCGGGCTCCGCCCCGCTTCCT
CCACGCGCCGGCCACCACCGCGCCGTGGGCGGCGGCCAACGTCGACCTCGCCACACATAGGTCCCTACAAGCCGGCGCAC
GAGGGGCTCGACGTGGTCCTCGCAACGTCCAAGGCCGCCTCCGGTGGTTCCCCAGCCATCCCGCCTCCGGCAACGGCGCC
ACAATTTCCGCCGCCGAGGGCTACGACGGCGAGGACCGCGTTAGCACGTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15209.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis