Browse Element(s) Details


OsAffx.4689.1.S1_at

Description tigr:9634.m00009
TID=OsAffx.4689.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0114010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01090NANA6+96225..100496retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g01100NANA6+105083..105418retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g01110NANA6+107281..108048retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g01120NANA6+108866..109153retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g01130NANA6+111046..112893hypothetical protein
LOC_Os06g01140OsAffx.4689.1.S1_at10/116+120758..123012hypothetical protein
LOC_Os06g01150OsAffx.15208.1.S1_at11/116+125232..126339hypothetical protein
LOC_Os06g01160OsAffx.4690.1.S1_at11/116+129355..129738hypothetical protein
LOC_Os06g01170Os.39009.1.S1_at11/116+130104..137354PHD-finger family protein, expressed
LOC_Os06g01180Os.18360.1.S1_at11/116+137513..138803expressed protein
LOC_Os06g01190NANA6+139965..140255hypothetical protein
LOC_Os06g01200Os.49638.1.S1_at11/116+141315..145642Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4689.1.S1_at--427--8731Chr06:122871..122895 (25 bp)
TGTCAAGCTGATCCTATCGTCGTCC
LOC_Os06g01140
OsAffx.4689.1.S1_at--526--7071Chr06:122815..122839 (25 bp)
GTCAAGGTCGTTCGATCGTCGTCAC
LOC_Os06g01140
OsAffx.4689.1.S1_at--820--5331Chr06:122749..122773 (25 bp)
GAAGTCATCCTCCTTGAGTCGTCGC
LOC_Os06g01140
OsAffx.4689.1.S1_at--413--7411Chr06:122069..122091 (23 bp)
GTGTTCCTGTCATTTTGGAGTCTCC
LOC_Os06g01140
OsAffx.4689.1.S1_at--184--7291Chr06:122040..122064 (25 bp)
GTGCCGTTCGAGTTTGTCGCAGAAG
LOC_Os06g01140
OsAffx.4689.1.S1_at--303--10731Chr06:121896..121984 (25 bp)
TTGAATCCCATTTGCGAAAACCATT
LOC_Os06g01140
OsAffx.4689.1.S1_at--142--5511Chr06:121881..121969 (25 bp)
GAAAACCATTCCTACATTTCCATGT
LOC_Os06g01140
OsAffx.4689.1.S1_at--870--7411Chr06:121833..121857 (25 bp)
GTGTATTTACCTTTGACAACCCTAG
LOC_Os06g01140
OsAffx.4689.1.S1_at--582--5611NONE
GACAACCCTAGATGTACACCTCTGG
NONE
OsAffx.4689.1.S1_at--669--5813Chr11:13010273..13010297 (25 bp)
GACCCAAAGTTAGTGGTTTCTGTCT
NONE
OsAffx.4689.1.S1_at--900--6611Chr06:121185..121209 (25 bp)
GTTGGAACACATGGTTGGAGCCTGT
LOC_Os06g01140
Target Sequence 
TGTCAAGCTGATCCTATCGTCGTCCGCCTCTTCACCAAGCCAAAGCCGCCGTCATCGTCAAGGTCGTTCGATCGTCGTCA
CTGCACCAAGCCCATCCTCGCCTCCATGCAAGGGTCGCCACCGAAGTCATCCTCCTTGAGTCGTCGCCCTGTTCGTCGCC
GCCAGTCTCCTCCGTTCGTCGTCGGTCATCGTCATCGTTTCCTCGCCTCGTGCGTGGTGTTCCTGTCATTTTGGAGTCTC
CTGCGGTGCCGTTCGAGTTTGTCGCAGAAGCTTCCGAAGCCCTCCTTTTCTCGGAGCAAGGCAAGTCACGCTCTCCTGGA
GCATATTGAATCCCATTTGCGAAAACCATTCCTACATTTCCATGTTATGGCTTTACTTATTGAATATTGTGTATTTACCT
TTGACAACCCTAGATGTACACCTCTGGCCAAGGTTAAATTTATTCGAATAGCCGCGCCCTTGGTTATGGGCAAGCGGAGC
AATGACCCAAAGTTAGTGGTTTCTGTCTGTAGAGTTGGAACACATGGTTGGAGCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis