Browse Element(s) Details


Os.11622.1.S1_at

Description gb:AK065189.1
DB_XREF= gi:32975207
TID=Os.11622.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11622 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002E07, full insert sequence.
FL= gb:AK065189.1 gb:AK062144.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0136010/11Homogentisate 1,2-dioxygenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01304Os.11259.2.S1_at11/116+184697..190449Spotted leaf protein 11, putative, expressed
LOC_Os06g01304Os.11259.1.S1_a_at11/116+184697..190449Spotted leaf protein 11, putative, expressed
LOC_Os06g01320OsAffx.15212.1.S1_at11/116+194018..207583'chromo' domain containing protein, expressed
LOC_Os06g01320Os.18567.1.S1_x_at11/116+194018..207583'chromo' domain containing protein, expressed
LOC_Os06g01320Os.52692.1.S1_x_at10/116+194018..207583'chromo' domain containing protein, expressed
LOC_Os06g01340OsAffx.27416.1.S1_at11/116+208204..209107CCT motif family protein
LOC_Os06g01350Os.8578.1.S1_at11/116+212020..213695Transferase family protein, expressed
LOC_Os06g01350OsAffx.28276.1.S1_x_at1/116+212020..213695Transferase family protein, expressed
LOC_Os06g01360Os.11622.1.S1_at10/116+214046..217208Homogentisate 1,2-dioxygenase, putative, expressed
LOC_Os06g01370Os.14023.2.S1_at11/116+218460..220117expressed protein
LOC_Os06g01370Os.14023.2.S1_x_at11/116+218460..220117expressed protein
LOC_Os06g01370Os.14023.1.S1_x_at11/116+218460..220117expressed protein
LOC_Os06g01370Os.14023.1.S1_at10/116+218460..220117expressed protein
LOC_Os06g01390Os.9192.1.S1_at11/116+226847..231808Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390Os.9192.2.S1_x_at11/116+226847..231808Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390Os.9192.2.S1_at11/116+226847..231808Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390OsAffx.28164.2.S1_at1/116+226847..231808Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01400Os.52272.1.S1_at11/116+232787..243624glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01400Os.17279.1.S1_s_at11/116+232787..243624glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01400Os.17279.1.S1_at11/116+232787..243624glycyl-tRNA synthetase beta subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006559biological_processL-phenylalanine catabolism
GO:0006572biological_processtyrosine catabolism
GO:0004411molecular_functionhomogentisate 1,2-dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11622.1.S1_at--857--3071Chr06:214584..214608 (25 bp)
AATCAGCCGTCCTGATGCCAATGAG
LOC_Os06g01360
Os.11622.1.S1_at--1002--9791Chr06:214549..214573 (25 bp)
TAAGCGGCACGCTTGCATTCATGTT
LOC_Os06g01360
Os.11622.1.S1_at--55--4951Chr06:214535..214559 (25 bp)
GCATTCATGTTCGAGTCTGCACTCA
LOC_Os06g01360
Os.11622.1.S1_at--195--7671Chr06:214471..214495 (25 bp)
GGGATCTCGATTACTACCAGTGCTG
LOC_Os06g01360
Os.11622.1.S1_at--862--6591Chr06:214441..214465 (25 bp)
GATTGAAATCCCACTTCTCACATGA
LOC_Os06g01360
Os.11622.1.S1_at--205--5431Chr06:214315..214339 (25 bp)
GAACCATTCACCAGATCCGTGTAAG
LOC_Os06g01360
Os.11622.1.S1_at--258--631Chr06:214279..214303 (25 bp)
ATGCTCAGCAGCCTGTACTGTACAA
LOC_Os06g01360
Os.11622.1.S1_at--990--6151Chr06:214127..214151 (25 bp)
GAGGTACCATTAACATGCCGCCGGA
LOC_Os06g01360
Os.11622.1.S1_at--741--6771Chr06:214094..214118 (25 bp)
GTTACATTCGCAACTTGGGACTGTT
LOC_Os06g01360
Os.11622.1.S1_at--405--8111Chr06:214077..214101 (25 bp)
GGACTGTTAACATGTTCCCCTCTGT
LOC_Os06g01360
Os.11622.1.S1_at--10--3751NONE
CTCTGTTGAGGACCCCGATTGATGT
NONE
Target Sequence 
AATCAGCCGTCCTGATGCCAATGAGCCATCAAGGCTAAGCGGCACGCTTGCATTCATGTTCGAGTCTGCACTCATCCCCA
GGGTTTGCCAATGGGCCCTCGATTCCCCATCCCGGGATCTCGATTACTACCAGTGCTGGATTGGATTGAAATCCCACTTC
TCACATGACAATGGAGGGGCAACCAGCGAAGAACCATGCAGAAAGTAGCTTTGATCAGTTTTAGTAGCTTATGATGCTGT
GCTTGTGTATATTTTGTGAGGCTGTAACTGAACCATTCACCAGATCCGTGTAAGTAAAGACAATAATGCTCAGCAGCCTG
TACTGTACAATCGTGGGTATAGCATTATCAGAAGCAAGAATGTCAATTTCAATAAGAGGTTGCCTACACTGTAGGCAGAT
TAGTACAGGCGTGTTTGTAACACCATGAATGAATGAATGGATGGATGGACACCGTGTGAGGTACCATTAACATGCCGCCG
GAAAGAAGATGTTACATTCGCAACTTGGGACTGTTAACATGTTCCCCTCTGTTGAGGACCCCGATTGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11622.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis