Browse Element(s) Details


OsAffx.27416.1.S1_at

Description tigr:9634.m00030
TID=OsAffx.27416.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=B-box zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0134011/11CCT motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01290Os.14640.1.S1_at3/116+181155..183321expressed protein
LOC_Os06g01304Os.11259.2.S1_at11/116+184697..190449Spotted leaf protein 11, putative, expressed
LOC_Os06g01304Os.11259.1.S1_a_at11/116+184697..190449Spotted leaf protein 11, putative, expressed
LOC_Os06g01320OsAffx.15212.1.S1_at11/116+194018..207583'chromo' domain containing protein, expressed
LOC_Os06g01320Os.18567.1.S1_x_at11/116+194018..207583'chromo' domain containing protein, expressed
LOC_Os06g01320Os.52692.1.S1_x_at10/116+194018..207583'chromo' domain containing protein, expressed
LOC_Os06g01340OsAffx.27416.1.S1_at11/116+208204..209107CCT motif family protein
LOC_Os06g01350Os.8578.1.S1_at11/116+212020..213695Transferase family protein, expressed
LOC_Os06g01350OsAffx.28276.1.S1_x_at1/116+212020..213695Transferase family protein, expressed
LOC_Os06g01360Os.11622.1.S1_at10/116+214046..217208Homogentisate 1,2-dioxygenase, putative, expressed
LOC_Os06g01370Os.14023.2.S1_at11/116+218460..220117expressed protein
LOC_Os06g01370Os.14023.2.S1_x_at11/116+218460..220117expressed protein
LOC_Os06g01370Os.14023.1.S1_x_at11/116+218460..220117expressed protein
LOC_Os06g01370Os.14023.1.S1_at10/116+218460..220117expressed protein
LOC_Os06g01390Os.9192.1.S1_at11/116+226847..231808Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390Os.9192.2.S1_x_at11/116+226847..231808Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390Os.9192.2.S1_at11/116+226847..231808Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390OsAffx.28164.2.S1_at1/116+226847..231808Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01400Os.52272.1.S1_at11/116+232787..243624glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01400Os.17279.1.S1_s_at11/116+232787..243624glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01400Os.17279.1.S1_at11/116+232787..243624glycyl-tRNA synthetase beta subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27416.1.S1_at--440--4411Chr06:208641..208665 (25 bp)
GCCAGCTACCTGCAGTTTACAACAA
LOC_Os06g01340
OsAffx.27416.1.S1_at--705--8051Chr06:208675..208699 (25 bp)
GGAGAAGAGCTACTTCCAACTCTCT
LOC_Os06g01340
OsAffx.27416.1.S1_at--708--9211Chr06:208689..208713 (25 bp)
TCCAACTCTCTTATCTGCGACTGCG
LOC_Os06g01340
OsAffx.27416.1.S1_at--384--4591Chr06:208705..208729 (25 bp)
GCGACTGCGACTCCTAATACTGCTA
LOC_Os06g01340
OsAffx.27416.1.S1_at--606--3091Chr06:208720..208744 (25 bp)
AATACTGCTACTGCTGCGCCAATGG
LOC_Os06g01340
OsAffx.27416.1.S1_at--929--9751Chr06:208799..208823 (25 bp)
TAAGGAACATTCACAAGCGGGAGGA
LOC_Os06g01340
OsAffx.27416.1.S1_at--1059--5851Chr06:208832..208980 (25 bp)
GAGCCAAGCTCAGGTTCAGCAAGCA
LOC_Os06g01340
OsAffx.27416.1.S1_at--734--3431Chr06:208979..209003 (25 bp)
CAGATCAAGTATGCCTGCCGCAAGG
LOC_Os06g01340
OsAffx.27416.1.S1_at--670--5851Chr06:209007..209031 (25 bp)
GAGCCGACGCACGAAAGCGGGTCAA
LOC_Os06g01340
OsAffx.27416.1.S1_at--78--2671Chr06:209021..209045 (25 bp)
AAGCGGGTCAAAGGCCGATTCGCAA
LOC_Os06g01340
OsAffx.27416.1.S1_at--683--2931Chr06:209031..209055 (25 bp)
AAGGCCGATTCGCAAAGGCCTCTTC
LOC_Os06g01340
Target Sequence 
GCCAGCTACCTGCAGTTTACAACAACGAGGAGAAGGAGAAGAGCTACTTCCAACTCTCTTATCTGCGACTGCGACTCCTA
ATACTGCTACTGCTGCGCCAATGGCAATGCCACCCCCACCACTACAACACCACACCACCACCTCCCTCATCATGATGATA
AGGAACATTCACAAGCGGGAGGAGAGGAACAGAGCCAAGCTCAGGTTCAGCAAGCAGATCAAGTATGCCTGCCGCAAGGC
CGGAGCCGACGCACGAAAGCGGGTCAAAGGCCGATTCGCAAAGGCCTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27416.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis